Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:20309545-20869684

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkhd1 1 20057779 to 20618064 560285 - protein coding gene polycystic kidney and hepatic disease 1
Tssr17 1 20356414 to 20356421 7 + TSS region transcription start site region 17
Tssr6049 1 20356453 to 20356485 32 + TSS region transcription start site region 6049
4930486I03Rik 1 20356454 to 20392300 35846 + antisense lncRNA gene RIKEN cDNA 4930486I03 gene
Gm15795 1 20444258 to 20444810 552 - pseudogene predicted gene 15795
Gm24162 1 20444811 to 20444912 101 - snRNA gene predicted gene, 24162
D1Mit52 1 20478908 to 20479054 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 52
D1Mit52.2 1 20479080 to 20479220 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 52.2
Tssr11072 1 20511703 to 20511706 3 - TSS region transcription start site region 11072
Tssr11073 1 20565250 to 20565258 8 - TSS region transcription start site region 11073
Tssr11074 1 20586909 to 20586913 4 - TSS region transcription start site region 11074
D1Mit276 1 20589545 to 20589684 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 276
Tssr18 1 20606080 to 20606084 4 + TSS region transcription start site region 18
Tssr11075 1 20617973 to 20617990 17 - TSS region transcription start site region 11075
Tssr11076 1 20617992 to 20618089 97 - TSS region transcription start site region 11076
Tssr11077 1 20618092 to 20618097 5 - TSS region transcription start site region 11077
Tssr11078 1 20626820 to 20626842 22 - TSS region transcription start site region 11078
Tssr6050 1 20669879 to 20669884 5 + TSS region transcription start site region 6050
Lincmd1 1 20669882 to 20682958 13076 + lincRNA gene long intergenic non-protein coding RNA of muscle differentiation 1
Gm28653 1 20669882 to 20684298 14416 + lincRNA gene predicted gene 28653
Tssr6051 1 20670066 to 20670081 15 + TSS region transcription start site region 6051
Mirc37 1 20679010 to 20682887 3877 complex/cluster/region microRNA cluster 37, including Mir133b through Mir206
Mir206 1 20679010 to 20679082 72 + miRNA gene microRNA 206
Mir133b 1 20682769 to 20682887 118 + miRNA gene microRNA 133b
Tssr6052 1 20682855 to 20682857 2 + TSS region transcription start site region 6052
1700113H21Rik 1 20714276 to 20714742 466 unclassified gene RIKEN cDNA 1700113H21 gene
Tssr6053 1 20730903 to 20730908 5 + TSS region transcription start site region 6053
Il17a 1 20730905 to 20734496 3591 + protein coding gene interleukin 17A
Il17f 1 20777146 to 20785274 8128 - protein coding gene interleukin 17F
Tssr11079 1 20784266 to 20784271 5 - TSS region transcription start site region 11079
Mcm3 1 20803014 to 20820213 17199 - protein coding gene minichromosome maintenance complex component 3
Tssr11080 1 20804814 to 20804817 3 - TSS region transcription start site region 11080
Tssr11081 1 20816757 to 20816771 14 - TSS region transcription start site region 11081
Tssr11082 1 20817298 to 20817325 27 - TSS region transcription start site region 11082
Cpgi69 1 20819874 to 20820410 536 CpG island CpG island 69
Tssr11083 1 20820213 to 20820286 73 - TSS region transcription start site region 11083
Gm20587 1 20821331 to 20822515 1184 + pseudogene predicted gene, 20587
Gm28065 1 20836661 to 20839689 3028 + lincRNA gene predicted gene 28065
Tssr6054 1 20836826 to 20836848 22 + TSS region transcription start site region 6054
Gm24723 1 20842535 to 20842666 131 - snoRNA gene predicted gene, 24723