Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:20129691-22782017

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkhd1 1 20057779 to 20618064 560285 - protein coding gene polycystic kidney and hepatic disease 1
Tssr11071 1 20167085 to 20167090 5 - TSS region transcription start site region 11071
Tssr17 1 20356414 to 20356421 7 + TSS region transcription start site region 17
Tssr6049 1 20356453 to 20356485 32 + TSS region transcription start site region 6049
4930486I03Rik 1 20356454 to 20392300 35846 + antisense lncRNA gene RIKEN cDNA 4930486I03 gene
Gm15795 1 20444258 to 20444810 552 - pseudogene predicted gene 15795
Gm24162 1 20444811 to 20444912 101 - snRNA gene predicted gene, 24162
D1Mit52 1 20478908 to 20479054 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 52
D1Mit52.2 1 20479080 to 20479220 140 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 52.2
Tssr11072 1 20511703 to 20511706 3 - TSS region transcription start site region 11072
Tssr11073 1 20565250 to 20565258 8 - TSS region transcription start site region 11073
Tssr11074 1 20586909 to 20586913 4 - TSS region transcription start site region 11074
D1Mit276 1 20589545 to 20589684 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 276
Tssr18 1 20606080 to 20606084 4 + TSS region transcription start site region 18
Tssr11075 1 20617973 to 20617990 17 - TSS region transcription start site region 11075
Tssr11076 1 20617992 to 20618089 97 - TSS region transcription start site region 11076
Tssr11077 1 20618092 to 20618097 5 - TSS region transcription start site region 11077
Tssr11078 1 20626820 to 20626842 22 - TSS region transcription start site region 11078
Tssr6050 1 20669879 to 20669884 5 + TSS region transcription start site region 6050
Lincmd1 1 20669882 to 20682958 13076 + lincRNA gene long intergenic non-protein coding RNA of muscle differentiation 1
Gm28653 1 20669882 to 20684298 14416 + lincRNA gene predicted gene 28653
Tssr6051 1 20670066 to 20670081 15 + TSS region transcription start site region 6051
Mir206 1 20679010 to 20679082 72 + miRNA gene microRNA 206
Mirc37 1 20679010 to 20682887 3877 complex/cluster/region microRNA cluster 37, including Mir133b through Mir206
Mir133b 1 20682769 to 20682887 118 + miRNA gene microRNA 133b
Tssr6052 1 20682855 to 20682857 2 + TSS region transcription start site region 6052
1700113H21Rik 1 20714276 to 20714742 466 unclassified gene RIKEN cDNA 1700113H21 gene
Tssr6053 1 20730903 to 20730908 5 + TSS region transcription start site region 6053
Il17a 1 20730905 to 20734496 3591 + protein coding gene interleukin 17A
Il17f 1 20777146 to 20785274 8128 - protein coding gene interleukin 17F
Tssr11079 1 20784266 to 20784271 5 - TSS region transcription start site region 11079
Mcm3 1 20803014 to 20820213 17199 - protein coding gene minichromosome maintenance complex component 3
Tssr11080 1 20804814 to 20804817 3 - TSS region transcription start site region 11080
Tssr11081 1 20816757 to 20816771 14 - TSS region transcription start site region 11081
Tssr11082 1 20817298 to 20817325 27 - TSS region transcription start site region 11082
Cpgi69 1 20819874 to 20820410 536 CpG island CpG island 69
Tssr11083 1 20820213 to 20820286 73 - TSS region transcription start site region 11083
Gm20587 1 20821331 to 20822515 1184 + pseudogene predicted gene, 20587
Gm28065 1 20836661 to 20839689 3028 + lincRNA gene predicted gene 28065
Tssr6054 1 20836826 to 20836848 22 + TSS region transcription start site region 6054
Gm24723 1 20842535 to 20842666 131 - snoRNA gene predicted gene, 24723
Tssr11084 1 20869924 to 20869930 6 - TSS region transcription start site region 11084
Tssr11085 1 20869951 to 20869954 3 - TSS region transcription start site region 11085
Tssr19 1 20869971 to 20869977 6 - TSS region transcription start site region 19
Obq2 1 20871396 to 20871663 267 QTL obesity QTL 2
D1Mit231 1 20871396 to 20871663 267 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 231
6720483E21Rik 1 20888650 to 20890473 1823 - lincRNA gene RIKEN cDNA 6720483E21 gene
Cpgi70 1 20890402 to 20891391 989 CpG island CpG island 70
Tssr6055 1 20890547 to 20890560 13 + TSS region transcription start site region 6055
Tssr6056 1 20890562 to 20890587 25 + TSS region transcription start site region 6056
Tssr6057 1 20890595 to 20890617 22 + TSS region transcription start site region 6057
Paqr8 1 20890622 to 20939650 49028 + protein coding gene progestin and adipoQ receptor family member VIII
Gm24171 1 20915410 to 20915540 130 - snoRNA gene predicted gene, 24171
Tssr6058 1 20917840 to 20917854 14 + TSS region transcription start site region 6058
Tssr6059 1 20917856 to 20917859 3 + TSS region transcription start site region 6059
Cpgi71 1 20934588 to 20935590 1002 CpG island CpG island 71
Gm28064 1 20945711 to 20946914 1203 + pseudogene predicted gene 28064
Cpgi72 1 20951528 to 20952055 527 CpG island CpG island 72
Tssr6060 1 20951592 to 20951603 11 + TSS region transcription start site region 6060
Tssr6061 1 20951606 to 20951635 29 + TSS region transcription start site region 6061
Efhc1 1 20951626 to 20990841 39215 + protein coding gene EF-hand domain (C-terminal) containing 1
Tssr6062 1 20951666 to 20951717 51 + TSS region transcription start site region 6062
Tssr6063 1 20951725 to 20951734 9 + TSS region transcription start site region 6063
Tssr11086 1 20997607 to 20997611 4 - TSS region transcription start site region 11086
Tram2 1 21001397 to 21079225 77828 - protein coding gene translocating chain-associating membrane protein 2
Tssr11087 1 21001437 to 21001452 15 - TSS region transcription start site region 11087
D1Mit4 1 21069244 to 21069436 192 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 4
Cpgi73 1 21078734 to 21079876 1142 CpG island CpG island 73
Tssr11088 1 21079162 to 21079243 81 - TSS region transcription start site region 11088
Gm28287 1 21080114 to 21081748 1634 + antisense lncRNA gene predicted gene 28287
Cpgi74 1 21166395 to 21166643 248 CpG island CpG island 74
Gm2693 1 21178988 to 21187427 8439 + pseudogene predicted gene 2693
Gm32947 1 21189046 to 21195335 6289 - lncRNA gene predicted gene, 32947
Tssr6064 1 21218575 to 21218617 42 + TSS region transcription start site region 6064
Tmem14a 1 21218575 to 21230167 11592 + protein coding gene transmembrane protein 14A
Tssr6065 1 21218662 to 21218673 11 + TSS region transcription start site region 6065
Cpgi75 1 21218665 to 21218966 301 CpG island CpG island 75
Tssr6066 1 21218798 to 21218824 26 + TSS region transcription start site region 6066
Tssr6067 1 21218825 to 21218858 33 + TSS region transcription start site region 6067
D1Mit372a 1 21220125 to 21220231 106 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 372a
Gm38224 1 21234722 to 21236821 2099 + unclassified gene predicted gene, 38224
Tssr6068 1 21240581 to 21240588 7 + TSS region transcription start site region 6068
Gsta3 1 21240585 to 21265575 24990 + protein coding gene glutathione S-transferase, alpha 3
Tssr6069 1 21240597 to 21240628 31 + TSS region transcription start site region 6069
Tssr6070 1 21240631 to 21240642 11 + TSS region transcription start site region 6070
Tssr6071 1 21249741 to 21249751 10 + TSS region transcription start site region 6071
Tssr6072 1 21249804 to 21249819 15 + TSS region transcription start site region 6072
Gm28836 1 21250359 to 21271593 21234 - antisense lncRNA gene predicted gene 28836
Tssr11089 1 21256186 to 21256216 30 - TSS region transcription start site region 11089
Tssr11090 1 21256501 to 21256512 11 - TSS region transcription start site region 11090
Tssr6073 1 21256746 to 21256758 12 + TSS region transcription start site region 6073
Tssr6074 1 21257141 to 21257154 13 + TSS region transcription start site region 6074
Tssr6075 1 21262816 to 21262834 18 + TSS region transcription start site region 6075
Tssr6076 1 21262835 to 21262868 33 + TSS region transcription start site region 6076
Tssr6077 1 21262891 to 21262903 12 + TSS region transcription start site region 6077
Tssr6078 1 21264836 to 21264867 31 + TSS region transcription start site region 6078
D1Mit372b 1 21270020 to 21270142 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 372b
Tssr6079 1 21272366 to 21272401 35 + TSS region transcription start site region 6079
Gm7094 1 21272403 to 21272906 503 + pseudogene predicted pseudogene 7094
Gm4956 1 21285246 to 21298312 13066 - pseudogene predicted gene 4956
Tssr11091 1 21291526 to 21291543 17 - TSS region transcription start site region 11091
Tssr11092 1 21291553 to 21291562 9 - TSS region transcription start site region 11092
Tssr6080 1 21291663 to 21291674 11 + TSS region transcription start site region 6080
Tssr11093 1 21291679 to 21291682 3 - TSS region transcription start site region 11093
Tssr11094 1 21298220 to 21298260 40 - TSS region transcription start site region 11094
Tssr11095 1 21299986 to 21300005 19 - TSS region transcription start site region 11095
Gm21909 1 21312517 to 21316320 3803 - pseudogene predicted gene, 21909
Tssr11096 1 21325736 to 21325740 4 - TSS region transcription start site region 11096
Tssr6081 1 21349598 to 21349619 21 + TSS region transcription start site region 6081
Tssr6082 1 21349669 to 21349700 31 + TSS region transcription start site region 6082
Khdc1a 1 21349677 to 21352199 2522 + protein coding gene KH domain containing 1A
Gm16329 1 21354005 to 21355116 1111 + pseudogene predicted gene 16329
Gm16327 1 21364803 to 21365030 227 + pseudogene predicted gene 16327
Tssr6083 1 21368235 to 21368256 21 + TSS region transcription start site region 6083
Khdc1c 1 21368331 to 21369743 1412 + protein coding gene KH domain containing 1C
Gm33147 1 21369788 to 21381308 11520 - lncRNA gene predicted gene, 33147
Gm2709 1 21372670 to 21373764 1094 + pseudogene predicted gene 2709
Gm16533 1 21379555 to 21379782 227 + pseudogene predited gene 16533
Khdc1b 1 21383556 to 21386373 2817 + protein coding gene KH domain containing 1B
Gm16328 1 21390906 to 21391101 195 + pseudogene predicted gene 16328
Kcnq5 1 21398403 to 21961942 563539 - protein coding gene potassium voltage-gated channel, subfamily Q, member 5
D1Mit317 1 21427649 to 21427770 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 317
Gm36949 1 21454691 to 21457017 2326 - unclassified gene predicted gene, 36949
Gm7658 1 21511933 to 21513056 1123 - pseudogene predicted gene 7658
A630064C07Rik 1 21804146 to 21806023 1877 unclassified gene RIKEN cDNA A630064C07 gene
Gm38243 1 21838948 to 21840514 1566 - unclassified gene predicted gene, 38243
Obq23 1 21942441 to 21942441 0 QTL obesity QTL 23
5830474E16Rik 1 21952102 to 21953457 1355 unclassified gene RIKEN cDNA 5830474E16 gene
Gm26580 1 21959842 to 21962530 2688 + lincRNA gene predicted gene, 26580
D1Dcr6 1 21960289 to 21960390 101 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 6
Cpgi76 1 21960566 to 21962391 1825 CpG island CpG island 76
Tssr11097 1 21961478 to 21961509 31 - TSS region transcription start site region 11097
Tssr11098 1 21962334 to 21962392 58 - TSS region transcription start site region 11098
Gm5696 1 22030064 to 22030615 551 - pseudogene predicted gene 5696
Cpgi77 1 22030410 to 22030588 178 CpG island CpG island 77
D1Dcr7 1 22050596 to 22050691 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 7
D1Dcr8 1 22133369 to 22133467 98 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 8
Gm28239 1 22237849 to 22238295 446 + pseudogene predicted gene 28239
D1Dcr9 1 22245729 to 22245828 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 9
Rims1 1 22288422 to 22805724 517302 - protein coding gene regulating synaptic membrane exocytosis 1
D1Ertd228e 1 22307521 to 22307724 203 DNA segment DNA segment, Chr 1, ERATO Doi 228, expressed
Tssr11099 1 22315792 to 22315815 23 - TSS region transcription start site region 11099
Tssr11100 1 22315823 to 22315834 11 - TSS region transcription start site region 11100
Tssr11101 1 22315848 to 22315867 19 - TSS region transcription start site region 11101
Tssr11102 1 22315872 to 22315881 9 - TSS region transcription start site region 11102
Tssr11103 1 22398682 to 22398686 4 - TSS region transcription start site region 11103
Tssr20 1 22469260 to 22469261 1 - TSS region transcription start site region 20
Tssr11104 1 22509350 to 22509372 22 - TSS region transcription start site region 11104
Tssr11105 1 22509375 to 22509397 22 - TSS region transcription start site region 11105
Tssr11106 1 22512491 to 22512513 22 - TSS region transcription start site region 11106
Tssr11107 1 22512516 to 22512559 43 - TSS region transcription start site region 11107
Tssr11108 1 22512572 to 22512579 7 - TSS region transcription start site region 11108
Cpgi78 1 22533056 to 22534254 1198 CpG island CpG island 78
Tssr6084 1 22534122 to 22534123 1 + TSS region transcription start site region 6084
Tssr11109 1 22562534 to 22562535 1 - TSS region transcription start site region 11109
D1Mit1008 1 22669359 to 22669519 160 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1008
Gm26866 1 22740764 to 22741565 801 + pseudogene predicted gene, 26866