Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:194643779-195234207

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plxna2 1 194619829 to 194816869 197040 + protein coding gene plexin A2
Gm37783 1 194650319 to 194652174 1855 + unclassified gene predicted gene, 37783
Tssr15865 1 194651828 to 194651860 32 - TSS region transcription start site region 15865
Gm37674 1 194669673 to 194671506 1833 + unclassified gene predicted gene, 37674
Gm38036 1 194677002 to 194680565 3563 + unclassified gene predicted gene, 38036
Gm46202 1 194686067 to 194719262 33195 - lncRNA gene predicted gene, 46202
2900035J10Rik 1 194732707 to 194733238 531 + unclassified gene RIKEN cDNA 2900035J10 gene
Tssr381 1 194744121 to 194744124 3 + TSS region transcription start site region 381
Tssr10842 1 194749467 to 194749480 13 + TSS region transcription start site region 10842
Tssr10843 1 194749482 to 194749499 17 + TSS region transcription start site region 10843
Tssr15866 1 194774883 to 194774914 31 - TSS region transcription start site region 15866
Gm19777 1 194819730 to 194820087 357 - pseudogene predicted gene, 19777
Mir3962 1 194822001 to 194822064 63 + miRNA gene microRNA 3962
Gm23885 1 194858657 to 194858950 293 + unclassified non-coding RNA gene predicted gene, 23885
Cpgi1247 1 194879514 to 194879672 158 CpG island CpG island 1247
Gm39748 1 194886446 to 194901237 14791 - lncRNA gene predicted gene, 39748
Tssr382 1 194892232 to 194892240 8 + TSS region transcription start site region 382
Cpgi1248 1 194938779 to 194939207 428 CpG island CpG island 1248
Cd34 1 194938819 to 194961279 22460 + protein coding gene CD34 antigen
Tssr10844 1 194938838 to 194938845 7 + TSS region transcription start site region 10844
Tssr10845 1 194938870 to 194938968 98 + TSS region transcription start site region 10845
Tssr10846 1 194938970 to 194938981 11 + TSS region transcription start site region 10846
Tssr10847 1 194943853 to 194943866 13 + TSS region transcription start site region 10847
Gm16897 1 194955759 to 194976959 21200 - antisense lncRNA gene predicted gene, 16897
Gm39749 1 194967967 to 194970875 2908 - lncRNA gene predicted gene, 39749
Cpgi1249 1 194976051 to 194977075 1024 CpG island CpG island 1249
Tssr10848 1 194976342 to 194976391 49 + TSS region transcription start site region 10848
Tssr10849 1 194976400 to 194976431 31 + TSS region transcription start site region 10849
Tssr10850 1 194977054 to 194977059 5 + TSS region transcription start site region 10850
Tssr10851 1 194981143 to 194981148 5 + TSS region transcription start site region 10851
Tssr10852 1 194986519 to 194986544 25 + TSS region transcription start site region 10852
Tssr10853 1 194986594 to 194986611 17 + TSS region transcription start site region 10853
Tssr10854 1 194986615 to 194986641 26 + TSS region transcription start site region 10854
Tssr10855 1 194986649 to 194986683 34 + TSS region transcription start site region 10855
Gm32250 1 194989062 to 194995345 6283 - lincRNA gene predicted gene, 32250
Tssr10856 1 194991248 to 194991257 9 + TSS region transcription start site region 10856
Gm37334 1 194993258 to 194996195 2937 + unclassified gene predicted gene, 37334
Tssr10857 1 194995510 to 194995520 10 + TSS region transcription start site region 10857
Tssr15867 1 194999444 to 194999472 28 - TSS region transcription start site region 15867
Tssr10858 1 195013620 to 195013628 8 + TSS region transcription start site region 10858
9630010A21Rik 1 195013746 to 195016448 2702 + unclassified gene RIKEN cDNA 9630010A21 gene
Tssr10859 1 195017150 to 195017181 31 + TSS region transcription start site region 10859
A330023F24Rik 1 195017399 to 195037908 20509 + lncRNA gene RIKEN cDNA A330023F24 gene
Tssr10860 1 195017416 to 195017431 15 + TSS region transcription start site region 10860
Gm37027 1 195017892 to 195018242 350 - lincRNA gene predicted gene, 37027
Tssr15868 1 195018240 to 195018252 12 - TSS region transcription start site region 15868
Tssr10861 1 195018595 to 195018600 5 + TSS region transcription start site region 10861
Tssr10862 1 195034186 to 195034227 41 + TSS region transcription start site region 10862
Cd46 1 195036826 to 195092249 55423 - protein coding gene CD46 antigen, complement regulatory protein
Mirc29 1 195037040 to 195037634 594 complex/cluster/region microRNA cluster 29, including Mir29b-2 through Mir29c
Mir29b-2 1 195037040 to 195037120 80 + miRNA gene microRNA 29b-2
Tssr10863 1 195037114 to 195037118 4 + TSS region transcription start site region 10863
Mir29c 1 195037547 to 195037634 87 + miRNA gene microRNA 29c
Gm37366 1 195042383 to 195044679 2296 + unclassified gene predicted gene, 37366
Gm37132 1 195079099 to 195081336 2237 - unclassified gene predicted gene, 37132
Cpgi1250 1 195092094 to 195092472 378 CpG island CpG island 1250
Tssr15869 1 195092242 to 195092253 11 - TSS region transcription start site region 15869
Cr1l 1 195098747 to 195131590 32843 - protein coding gene complement component (3b/4b) receptor 1-like
Cpgi1251 1 195130894 to 195131370 476 CpG island CpG island 1251
Tssr15870 1 195131342 to 195131407 65 - TSS region transcription start site region 15870
Tssr383 1 195131424 to 195131429 5 - TSS region transcription start site region 383
Tssr15871 1 195131444 to 195131453 9 - TSS region transcription start site region 15871
Tssr15872 1 195131493 to 195131504 11 - TSS region transcription start site region 15872
Tssr15873 1 195131505 to 195131534 29 - TSS region transcription start site region 15873
Tssr15874 1 195131536 to 195131588 52 - TSS region transcription start site region 15874
Tssr10864 1 195131630 to 195131644 14 + TSS region transcription start site region 10864
Gm32313 1 195131660 to 195135514 3854 + lncRNA gene predicted gene, 32313
Cr2 1 195136811 to 195176716 39905 - protein coding gene complement receptor 2
Tssr15875 1 195176637 to 195176646 9 - TSS region transcription start site region 15875
Tssr384 1 195176659 to 195176682 23 - TSS region transcription start site region 384
Tssr385 1 195176687 to 195176694 7 - TSS region transcription start site region 385
Tssr15876 1 195176707 to 195176725 18 - TSS region transcription start site region 15876
Tssr15877 1 195176772 to 195176783 11 - TSS region transcription start site region 15877
Gm29726 1 195195233 to 195197140 1907 + pseudogene predicted gene, 29726
Gm37887 1 195220051 to 195222766 2715 - unclassified gene predicted gene, 37887
Gm24802 1 195228278 to 195228398 120 + miRNA gene predicted gene, 24802