Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:193144791-196291869

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Elnt 1 162317638 to 194429220 32111582 QTL escape latencies during navigation task
Sluc37 1 175641251 to 194429220 18787969 QTL susceptibility to lung cancer 37
Tssr10811 1 193145284 to 193145296 12 + TSS region transcription start site region 10811
Cpgi1241 1 193152813 to 193153519 706 CpG island CpG island 1241
Tssr10812 1 193153107 to 193153116 9 + TSS region transcription start site region 10812
Irf6 1 193153111 to 193172023 18912 + protein coding gene interferon regulatory factor 6
Tssr10813 1 193153121 to 193153165 44 + TSS region transcription start site region 10813
Tssr10814 1 193153167 to 193153179 12 + TSS region transcription start site region 10814
Tssr10815 1 193153189 to 193153199 10 + TSS region transcription start site region 10815
Tssr10816 1 193156663 to 193156678 15 + TSS region transcription start site region 10816
Tssr10817 1 193156765 to 193156813 48 + TSS region transcription start site region 10817
Cpgi1242 1 193173213 to 193173993 780 CpG island CpG island 1242
Tssr15840 1 193173375 to 193173389 14 - TSS region transcription start site region 15840
Tssr15841 1 193173398 to 193173418 20 - TSS region transcription start site region 15841
A130010J15Rik 1 193173469 to 193177837 4368 + protein coding gene RIKEN cDNA A130010J15 gene
Tssr10818 1 193173574 to 193173595 21 + TSS region transcription start site region 10818
Tssr10819 1 193173736 to 193173757 21 + TSS region transcription start site region 10819
Traf3ip3 1 193175504 to 193201546 26042 - protein coding gene TRAF3 interacting protein 3
Tssr10820 1 193187257 to 193187307 50 + TSS region transcription start site region 10820
Gm15872 1 193187274 to 193192379 5105 + antisense lncRNA gene predicted gene 15872
Tssr15842 1 193197893 to 193197906 13 - TSS region transcription start site region 15842
Tssr15843 1 193197950 to 193198031 81 - TSS region transcription start site region 15843
Tssr15844 1 193201137 to 193201158 21 - TSS region transcription start site region 15844
Tssr15845 1 193201394 to 193201417 23 - TSS region transcription start site region 15845
Tssr15846 1 193201435 to 193201584 149 - TSS region transcription start site region 15846
Tssr15847 1 193201597 to 193201608 11 - TSS region transcription start site region 15847
4930570N18Rik 1 193203038 to 193226208 23170 + antisense lncRNA gene RIKEN cDNA 4930570N18 gene
Tssr10821 1 193207708 to 193207730 22 + TSS region transcription start site region 10821
Hsd11b1 1 193221640 to 193264049 42409 - protein coding gene hydroxysteroid 11-beta dehydrogenase 1
D1Mit512 1 193241186 to 193241301 115 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 512
Tssr15848 1 193241507 to 193241533 26 - TSS region transcription start site region 15848
Tssr15849 1 193242346 to 193242368 22 - TSS region transcription start site region 15849
Tssr15850 1 193242426 to 193242433 7 - TSS region transcription start site region 15850
Gm38118 1 193259616 to 193261837 2221 - unclassified gene predicted gene, 38118
Tssr15851 1 193263993 to 193264004 11 - TSS region transcription start site region 15851
Tssr15852 1 193264006 to 193264079 73 - TSS region transcription start site region 15852
G0s2 1 193272160 to 193273188 1028 - protein coding gene G0/G1 switch gene 2
Cpgi1243 1 193272467 to 193272751 284 CpG island CpG island 1243
Tssr15853 1 193273099 to 193273117 18 - TSS region transcription start site region 15853
Tssr10822 1 193274601 to 193274612 11 + TSS region transcription start site region 10822
Tssr15854 1 193275083 to 193275090 7 - TSS region transcription start site region 15854
Gm37691 1 193281271 to 193283843 2572 + unclassified gene predicted gene, 37691
Gm37650 1 193289766 to 193290889 1123 - antisense lncRNA gene predicted gene, 37650
Lamb3 1 193294353 to 193343878 49525 + protein coding gene laminin, beta 3
Tssr10823 1 193301953 to 193301960 7 + TSS region transcription start site region 10823
Tssr10824 1 193301970 to 193301990 20 + TSS region transcription start site region 10824
Tssr10825 1 193301991 to 193301996 5 + TSS region transcription start site region 10825
Tssr10826 1 193301999 to 193302029 30 + TSS region transcription start site region 10826
Tssr10827 1 193302035 to 193302047 12 + TSS region transcription start site region 10827
Tssr10828 1 193302066 to 193302082 16 + TSS region transcription start site region 10828
Tssr10829 1 193303373 to 193303386 13 + TSS region transcription start site region 10829
Tssr10830 1 193326003 to 193326006 3 + TSS region transcription start site region 10830
Cpgi1244 1 193330055 to 193330270 215 CpG island CpG island 1244
Tssr10831 1 193332278 to 193332285 7 + TSS region transcription start site region 10831
Tssr10832 1 193334954 to 193334965 11 + TSS region transcription start site region 10832
Tssr379 1 193338568 to 193338587 19 + TSS region transcription start site region 379
Camk1g 1 193346346 to 193370298 23952 - protein coding gene calcium/calmodulin-dependent protein kinase I gamma
Tssr380 1 193360039 to 193360043 4 + TSS region transcription start site region 380
Gm37942 1 193366840 to 193367467 627 + unclassified gene predicted gene, 37942
Tssr15855 1 193370233 to 193370255 22 - TSS region transcription start site region 15855
Tssr15856 1 193370260 to 193370287 27 - TSS region transcription start site region 15856
Gm38022 1 193475290 to 193475692 402 + pseudogene predicted gene, 38022
Gm31753 1 193478803 to 193485017 6214 + lncRNA gene predicted gene, 31753
Gm38322 1 193493587 to 193495886 2299 + unclassified gene predicted gene, 38322
4631405K08Rik 1 193507238 to 193510174 2936 - lincRNA gene RIKEN cDNA 4631405K08 gene
Mir205 1 193507463 to 193507530 67 - miRNA gene microRNA 205
Tssr15857 1 193508463 to 193508474 11 - TSS region transcription start site region 15857
Tssr15858 1 193510024 to 193510034 10 - TSS region transcription start site region 15858
Tssr15859 1 193510080 to 193510089 9 - TSS region transcription start site region 15859
Tssr15860 1 193510124 to 193510133 9 - TSS region transcription start site region 15860
Tssr15861 1 193510169 to 193510177 8 - TSS region transcription start site region 15861
Tssr15862 1 193510202 to 193510216 14 - TSS region transcription start site region 15862
Tssr15863 1 193588624 to 193588665 41 - TSS region transcription start site region 15863
Tssr10833 1 193611216 to 193611219 3 + TSS region transcription start site region 10833
Tssr10834 1 193632696 to 193632724 28 + TSS region transcription start site region 10834
Cpgi1245 1 193632716 to 193632896 180 CpG island CpG island 1245
Gm31870 1 193655516 to 193749308 93792 + lncRNA gene predicted gene, 31870
Tssr10835 1 193655635 to 193655668 33 + TSS region transcription start site region 10835
Gm21362 1 193867009 to 193867936 927 + pseudogene predicted gene, 21362
D1Mit154 1 193879445 to 193879590 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 154
4930503O07Rik 1 194212187 to 194222759 10572 - lincRNA gene RIKEN cDNA 4930503O07 gene
Gm31988 1 194255234 to 194262683 7449 + lncRNA gene predicted gene, 31988
D1Mit155 1 194428969 to 194429220 251 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 155
Gm6403 1 194618217 to 194620869 2652 unclassified gene predicted gene 6403
Cpgi1246 1 194619465 to 194620980 1515 CpG island CpG island 1246
Tssr10836 1 194619815 to 194619833 18 + TSS region transcription start site region 10836
Plxna2 1 194619829 to 194816869 197040 + protein coding gene plexin A2
Tssr10837 1 194619850 to 194619872 22 + TSS region transcription start site region 10837
Tssr10838 1 194619887 to 194619914 27 + TSS region transcription start site region 10838
Tssr10839 1 194619917 to 194619932 15 + TSS region transcription start site region 10839
Tssr10840 1 194620101 to 194620110 9 + TSS region transcription start site region 10840
Tssr15864 1 194620864 to 194620881 17 - TSS region transcription start site region 15864
Tssr10841 1 194626907 to 194626912 5 + TSS region transcription start site region 10841
Gm37783 1 194650319 to 194652174 1855 + unclassified gene predicted gene, 37783
Tssr15865 1 194651828 to 194651860 32 - TSS region transcription start site region 15865
Gm37674 1 194669673 to 194671506 1833 + unclassified gene predicted gene, 37674
Gm38036 1 194677002 to 194680565 3563 + unclassified gene predicted gene, 38036
Gm46202 1 194686067 to 194719262 33195 - lncRNA gene predicted gene, 46202
2900035J10Rik 1 194732707 to 194733238 531 + unclassified gene RIKEN cDNA 2900035J10 gene
Tssr381 1 194744121 to 194744124 3 + TSS region transcription start site region 381
Tssr10842 1 194749467 to 194749480 13 + TSS region transcription start site region 10842
Tssr10843 1 194749482 to 194749499 17 + TSS region transcription start site region 10843
Tssr15866 1 194774883 to 194774914 31 - TSS region transcription start site region 15866
Gm19777 1 194819730 to 194820087 357 - pseudogene predicted gene, 19777
Mir3962 1 194822001 to 194822064 63 + miRNA gene microRNA 3962
Gm23885 1 194858657 to 194858950 293 + unclassified non-coding RNA gene predicted gene, 23885
Cpgi1247 1 194879514 to 194879672 158 CpG island CpG island 1247
Gm39748 1 194886446 to 194901237 14791 - lncRNA gene predicted gene, 39748
Tssr382 1 194892232 to 194892240 8 + TSS region transcription start site region 382
Cpgi1248 1 194938779 to 194939207 428 CpG island CpG island 1248
Cd34 1 194938819 to 194961279 22460 + protein coding gene CD34 antigen
Tssr10844 1 194938838 to 194938845 7 + TSS region transcription start site region 10844
Tssr10845 1 194938870 to 194938968 98 + TSS region transcription start site region 10845
Tssr10846 1 194938970 to 194938981 11 + TSS region transcription start site region 10846
Tssr10847 1 194943853 to 194943866 13 + TSS region transcription start site region 10847
Gm16897 1 194955759 to 194976959 21200 - antisense lncRNA gene predicted gene, 16897
Gm39749 1 194967967 to 194970875 2908 - lncRNA gene predicted gene, 39749
Cpgi1249 1 194976051 to 194977075 1024 CpG island CpG island 1249
Tssr10848 1 194976342 to 194976391 49 + TSS region transcription start site region 10848
Tssr10849 1 194976400 to 194976431 31 + TSS region transcription start site region 10849
Tssr10850 1 194977054 to 194977059 5 + TSS region transcription start site region 10850
Tssr10851 1 194981143 to 194981148 5 + TSS region transcription start site region 10851
Tssr10852 1 194986519 to 194986544 25 + TSS region transcription start site region 10852
Tssr10853 1 194986594 to 194986611 17 + TSS region transcription start site region 10853
Tssr10854 1 194986615 to 194986641 26 + TSS region transcription start site region 10854
Tssr10855 1 194986649 to 194986683 34 + TSS region transcription start site region 10855
Gm32250 1 194989062 to 194995345 6283 - lincRNA gene predicted gene, 32250
Tssr10856 1 194991248 to 194991257 9 + TSS region transcription start site region 10856
Gm37334 1 194993258 to 194996195 2937 + unclassified gene predicted gene, 37334
Tssr10857 1 194995510 to 194995520 10 + TSS region transcription start site region 10857
Tssr15867 1 194999444 to 194999472 28 - TSS region transcription start site region 15867
Tssr10858 1 195013620 to 195013628 8 + TSS region transcription start site region 10858
9630010A21Rik 1 195013746 to 195016448 2702 + unclassified gene RIKEN cDNA 9630010A21 gene
Tssr10859 1 195017150 to 195017181 31 + TSS region transcription start site region 10859
A330023F24Rik 1 195017399 to 195037908 20509 + lncRNA gene RIKEN cDNA A330023F24 gene
Tssr10860 1 195017416 to 195017431 15 + TSS region transcription start site region 10860
Gm37027 1 195017892 to 195018242 350 - lincRNA gene predicted gene, 37027
Tssr15868 1 195018240 to 195018252 12 - TSS region transcription start site region 15868
Tssr10861 1 195018595 to 195018600 5 + TSS region transcription start site region 10861
Tssr10862 1 195034186 to 195034227 41 + TSS region transcription start site region 10862
Cd46 1 195036826 to 195092249 55423 - protein coding gene CD46 antigen, complement regulatory protein
Mirc29 1 195037040 to 195037634 594 complex/cluster/region microRNA cluster 29, including Mir29b-2 through Mir29c
Mir29b-2 1 195037040 to 195037120 80 + miRNA gene microRNA 29b-2
Tssr10863 1 195037114 to 195037118 4 + TSS region transcription start site region 10863
Mir29c 1 195037547 to 195037634 87 + miRNA gene microRNA 29c
Gm37366 1 195042383 to 195044679 2296 + unclassified gene predicted gene, 37366
Gm37132 1 195079099 to 195081336 2237 - unclassified gene predicted gene, 37132
Cpgi1250 1 195092094 to 195092472 378 CpG island CpG island 1250
Tssr15869 1 195092242 to 195092253 11 - TSS region transcription start site region 15869
Cr1l 1 195098747 to 195131590 32843 - protein coding gene complement component (3b/4b) receptor 1-like
Cpgi1251 1 195130894 to 195131370 476 CpG island CpG island 1251
Tssr15870 1 195131342 to 195131407 65 - TSS region transcription start site region 15870
Tssr383 1 195131424 to 195131429 5 - TSS region transcription start site region 383
Tssr15871 1 195131444 to 195131453 9 - TSS region transcription start site region 15871
Tssr15872 1 195131493 to 195131504 11 - TSS region transcription start site region 15872
Tssr15873 1 195131505 to 195131534 29 - TSS region transcription start site region 15873
Tssr15874 1 195131536 to 195131588 52 - TSS region transcription start site region 15874
Tssr10864 1 195131630 to 195131644 14 + TSS region transcription start site region 10864
Gm32313 1 195131660 to 195135514 3854 + lncRNA gene predicted gene, 32313
Cr2 1 195136811 to 195176716 39905 - protein coding gene complement receptor 2
Tssr15875 1 195176637 to 195176646 9 - TSS region transcription start site region 15875
Tssr384 1 195176659 to 195176682 23 - TSS region transcription start site region 384
Tssr385 1 195176687 to 195176694 7 - TSS region transcription start site region 385
Tssr15876 1 195176707 to 195176725 18 - TSS region transcription start site region 15876
Tssr15877 1 195176772 to 195176783 11 - TSS region transcription start site region 15877
Gm29726 1 195195233 to 195197140 1907 + pseudogene predicted gene, 29726
Gm37887 1 195220051 to 195222766 2715 - unclassified gene predicted gene, 37887
Gm24802 1 195228278 to 195228398 120 + miRNA gene predicted gene, 24802
Gm27940 1 195240910 to 195241007 97 - unclassified non-coding RNA gene predicted gene, 27940
Cpgi1252 1 195241447 to 195241960 513 CpG island CpG island 1252
Tssr386 1 195241649 to 195241655 6 + TSS region transcription start site region 386
Gm38046 1 195259299 to 195259848 549 - unclassified gene predicted gene, 38046
Vmn2r-ps1 1 195290545 to 195291439 894 - pseudogene vomeronasal 2, receptor, pseudogene 1
Gm38194 1 195321283 to 195323493 2210 + unclassified gene predicted gene, 38194