Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:193030201-193230257

38 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Syt14	1	192891233 to 193035775	144542	-	protein coding gene	synaptotagmin XIV
Cpgi1239	1	193034908 to 193036328	1420		CpG island	CpG island 1239
Tssr15836	1	193035651 to 193035728	77	-	TSS region	transcription start site region 15836
Tssr15837	1	193035756 to 193035830	74	-	TSS region	transcription start site region 15837
Gm31406	1	193040973 to 193042405	1432	-	lincRNA gene	predicted gene, 31406
Gm39747	1	193048660 to 193100390	51730	+	lncRNA gene	predicted gene, 39747
Gm37103	1	193052500 to 193052614	114	+	pseudogene	predicted gene, 37103
Utp25	1	193104403 to 193130251	25848	-	protein coding gene	UTP25 small subunit processome component
Cpgi1240	1	193129733 to 193130453	720		CpG island	CpG island 1240
Tssr15838	1	193130201 to 193130257	56	-	TSS region	transcription start site region 15838
Tssr15839	1	193130258 to 193130271	13	-	TSS region	transcription start site region 15839
Tssr10811	1	193145284 to 193145296	12	+	TSS region	transcription start site region 10811
Cpgi1241	1	193152813 to 193153519	706		CpG island	CpG island 1241
Tssr10812	1	193153107 to 193153116	9	+	TSS region	transcription start site region 10812
Irf6	1	193153111 to 193172023	18912	+	protein coding gene	interferon regulatory factor 6
Tssr10813	1	193153121 to 193153165	44	+	TSS region	transcription start site region 10813
Tssr10814	1	193153167 to 193153179	12	+	TSS region	transcription start site region 10814
Tssr10815	1	193153189 to 193153199	10	+	TSS region	transcription start site region 10815
Tssr10816	1	193156663 to 193156678	15	+	TSS region	transcription start site region 10816
Tssr10817	1	193156765 to 193156813	48	+	TSS region	transcription start site region 10817
Cpgi1242	1	193173213 to 193173993	780		CpG island	CpG island 1242
Tssr15840	1	193173375 to 193173389	14	-	TSS region	transcription start site region 15840
Tssr15841	1	193173398 to 193173418	20	-	TSS region	transcription start site region 15841
A130010J15Rik	1	193173469 to 193177837	4368	+	protein coding gene	RIKEN cDNA A130010J15 gene
Tssr10818	1	193173574 to 193173595	21	+	TSS region	transcription start site region 10818
Tssr10819	1	193173736 to 193173757	21	+	TSS region	transcription start site region 10819
Traf3ip3	1	193175504 to 193201546	26042	-	protein coding gene	TRAF3 interacting protein 3
Tssr10820	1	193187257 to 193187307	50	+	TSS region	transcription start site region 10820
Gm15872	1	193187274 to 193192379	5105	+	antisense lncRNA gene	predicted gene 15872
Tssr15842	1	193197893 to 193197906	13	-	TSS region	transcription start site region 15842
Tssr15843	1	193197950 to 193198031	81	-	TSS region	transcription start site region 15843
Tssr15844	1	193201137 to 193201158	21	-	TSS region	transcription start site region 15844
Tssr15845	1	193201394 to 193201417	23	-	TSS region	transcription start site region 15845
Tssr15846	1	193201435 to 193201584	149	-	TSS region	transcription start site region 15846
Tssr15847	1	193201597 to 193201608	11	-	TSS region	transcription start site region 15847
4930570N18Rik	1	193203038 to 193226208	23170	+	antisense lncRNA gene	RIKEN cDNA 4930570N18 gene
Tssr10821	1	193207708 to 193207730	22	+	TSS region	transcription start site region 10821
Hsd11b1	1	193221640 to 193264049	42409	-	protein coding gene	hydroxysteroid 11-beta dehydrogenase 1