Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:193006953-193596960

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syt14 1 192891233 to 193035775 144542 - protein coding gene synaptotagmin XIV
Cpgi1239 1 193034908 to 193036328 1420 CpG island CpG island 1239
Tssr15836 1 193035651 to 193035728 77 - TSS region transcription start site region 15836
Tssr15837 1 193035756 to 193035830 74 - TSS region transcription start site region 15837
Gm31406 1 193040973 to 193042405 1432 - lincRNA gene predicted gene, 31406
Gm39747 1 193048660 to 193100390 51730 + lncRNA gene predicted gene, 39747
Gm37103 1 193052500 to 193052614 114 + pseudogene predicted gene, 37103
Utp25 1 193104403 to 193130251 25848 - protein coding gene UTP25 small subunit processome component
Cpgi1240 1 193129733 to 193130453 720 CpG island CpG island 1240
Tssr15838 1 193130201 to 193130257 56 - TSS region transcription start site region 15838
Tssr15839 1 193130258 to 193130271 13 - TSS region transcription start site region 15839
Tssr10811 1 193145284 to 193145296 12 + TSS region transcription start site region 10811
Cpgi1241 1 193152813 to 193153519 706 CpG island CpG island 1241
Tssr10812 1 193153107 to 193153116 9 + TSS region transcription start site region 10812
Irf6 1 193153111 to 193172023 18912 + protein coding gene interferon regulatory factor 6
Tssr10813 1 193153121 to 193153165 44 + TSS region transcription start site region 10813
Tssr10814 1 193153167 to 193153179 12 + TSS region transcription start site region 10814
Tssr10815 1 193153189 to 193153199 10 + TSS region transcription start site region 10815
Tssr10816 1 193156663 to 193156678 15 + TSS region transcription start site region 10816
Tssr10817 1 193156765 to 193156813 48 + TSS region transcription start site region 10817
Cpgi1242 1 193173213 to 193173993 780 CpG island CpG island 1242
Tssr15840 1 193173375 to 193173389 14 - TSS region transcription start site region 15840
Tssr15841 1 193173398 to 193173418 20 - TSS region transcription start site region 15841
A130010J15Rik 1 193173469 to 193177837 4368 + protein coding gene RIKEN cDNA A130010J15 gene
Tssr10818 1 193173574 to 193173595 21 + TSS region transcription start site region 10818
Tssr10819 1 193173736 to 193173757 21 + TSS region transcription start site region 10819
Traf3ip3 1 193175504 to 193201546 26042 - protein coding gene TRAF3 interacting protein 3
Tssr10820 1 193187257 to 193187307 50 + TSS region transcription start site region 10820
Gm15872 1 193187274 to 193192379 5105 + antisense lncRNA gene predicted gene 15872
Tssr15842 1 193197893 to 193197906 13 - TSS region transcription start site region 15842
Tssr15843 1 193197950 to 193198031 81 - TSS region transcription start site region 15843
Tssr15844 1 193201137 to 193201158 21 - TSS region transcription start site region 15844
Tssr15845 1 193201394 to 193201417 23 - TSS region transcription start site region 15845
Tssr15846 1 193201435 to 193201584 149 - TSS region transcription start site region 15846
Tssr15847 1 193201597 to 193201608 11 - TSS region transcription start site region 15847
4930570N18Rik 1 193203038 to 193226208 23170 + antisense lncRNA gene RIKEN cDNA 4930570N18 gene
Tssr10821 1 193207708 to 193207730 22 + TSS region transcription start site region 10821
Hsd11b1 1 193221640 to 193264049 42409 - protein coding gene hydroxysteroid 11-beta dehydrogenase 1
D1Mit512 1 193241186 to 193241301 115 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 512
Tssr15848 1 193241507 to 193241533 26 - TSS region transcription start site region 15848
Tssr15849 1 193242346 to 193242368 22 - TSS region transcription start site region 15849
Tssr15850 1 193242426 to 193242433 7 - TSS region transcription start site region 15850
Gm38118 1 193259616 to 193261837 2221 - unclassified gene predicted gene, 38118
Tssr15851 1 193263993 to 193264004 11 - TSS region transcription start site region 15851
Tssr15852 1 193264006 to 193264079 73 - TSS region transcription start site region 15852
G0s2 1 193272160 to 193273188 1028 - protein coding gene G0/G1 switch gene 2
Cpgi1243 1 193272467 to 193272751 284 CpG island CpG island 1243
Tssr15853 1 193273099 to 193273117 18 - TSS region transcription start site region 15853
Tssr10822 1 193274601 to 193274612 11 + TSS region transcription start site region 10822
Tssr15854 1 193275083 to 193275090 7 - TSS region transcription start site region 15854
Gm37691 1 193281271 to 193283843 2572 + unclassified gene predicted gene, 37691
Gm37650 1 193289766 to 193290889 1123 - antisense lncRNA gene predicted gene, 37650
Lamb3 1 193294353 to 193343878 49525 + protein coding gene laminin, beta 3
Tssr10823 1 193301953 to 193301960 7 + TSS region transcription start site region 10823
Tssr10824 1 193301970 to 193301990 20 + TSS region transcription start site region 10824
Tssr10825 1 193301991 to 193301996 5 + TSS region transcription start site region 10825
Tssr10826 1 193301999 to 193302029 30 + TSS region transcription start site region 10826
Tssr10827 1 193302035 to 193302047 12 + TSS region transcription start site region 10827
Tssr10828 1 193302066 to 193302082 16 + TSS region transcription start site region 10828
Tssr10829 1 193303373 to 193303386 13 + TSS region transcription start site region 10829
Tssr10830 1 193326003 to 193326006 3 + TSS region transcription start site region 10830
Cpgi1244 1 193330055 to 193330270 215 CpG island CpG island 1244
Tssr10831 1 193332278 to 193332285 7 + TSS region transcription start site region 10831
Tssr10832 1 193334954 to 193334965 11 + TSS region transcription start site region 10832
Tssr379 1 193338568 to 193338587 19 + TSS region transcription start site region 379
Camk1g 1 193346346 to 193370298 23952 - protein coding gene calcium/calmodulin-dependent protein kinase I gamma
Tssr380 1 193360039 to 193360043 4 + TSS region transcription start site region 380
Gm37942 1 193366840 to 193367467 627 + unclassified gene predicted gene, 37942
Tssr15855 1 193370233 to 193370255 22 - TSS region transcription start site region 15855
Tssr15856 1 193370260 to 193370287 27 - TSS region transcription start site region 15856
Gm38022 1 193475290 to 193475692 402 + pseudogene predicted gene, 38022
Gm31753 1 193478803 to 193485017 6214 + lncRNA gene predicted gene, 31753
Gm38322 1 193493587 to 193495886 2299 + unclassified gene predicted gene, 38322
4631405K08Rik 1 193507238 to 193510174 2936 - lincRNA gene RIKEN cDNA 4631405K08 gene
Mir205 1 193507463 to 193507530 67 - miRNA gene microRNA 205
Tssr15857 1 193508463 to 193508474 11 - TSS region transcription start site region 15857
Tssr15858 1 193510024 to 193510034 10 - TSS region transcription start site region 15858
Tssr15859 1 193510080 to 193510089 9 - TSS region transcription start site region 15859
Tssr15860 1 193510124 to 193510133 9 - TSS region transcription start site region 15860
Tssr15861 1 193510169 to 193510177 8 - TSS region transcription start site region 15861
Tssr15862 1 193510202 to 193510216 14 - TSS region transcription start site region 15862
Tssr15863 1 193588624 to 193588665 41 - TSS region transcription start site region 15863