Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:191977892-192858116

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaj1 1 181004752 to 192168463 11163711 QTL anxiety in A/J 1
Axtq1 1 181004752 to 192168463 11163711 QTL anxiety QTL 1
Rd3 1 191977370 to 191988283 10913 + protein coding gene retinal degeneration 3
Tssr10800 1 191978247 to 191978259 12 + TSS region transcription start site region 10800
Tssr10801 1 191978284 to 191978291 7 + TSS region transcription start site region 10801
Cpgi1229 1 191985177 to 191985586 409 CpG island CpG island 1229
Gm26670 1 191986832 to 191990138 3306 - antisense lncRNA gene predicted gene, 26670
Cpgi1230 1 191989858 to 191990295 437 CpG island CpG island 1230
Tssr15808 1 191990142 to 191990155 13 - TSS region transcription start site region 15808
Gm32460 1 191992861 to 191993092 231 + pseudogene predicted gene, 32460
Traf5 1 191997205 to 192092559 95354 - protein coding gene TNF receptor-associated factor 5
Mir3473c 1 191998554 to 191998634 80 - miRNA gene microRNA 3473c
D1Mit463 1 191998812 to 191998936 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 463
Tssr15809 1 192061722 to 192061736 14 - TSS region transcription start site region 15809
Tssr15810 1 192061823 to 192061844 21 - TSS region transcription start site region 15810
Tssr15811 1 192064611 to 192064641 30 - TSS region transcription start site region 15811
Gstp-ps 1 192073820 to 192074450 630 - pseudogene glutathione S-transferase, pi, pseudogene
Tssr15812 1 192074013 to 192074036 23 - TSS region transcription start site region 15812
Tssr15813 1 192074322 to 192074353 31 - TSS region transcription start site region 15813
Tssr15814 1 192074466 to 192074491 25 - TSS region transcription start site region 15814
Tssr15815 1 192074523 to 192074529 6 - TSS region transcription start site region 15815
Cpgi1231 1 192091884 to 192092792 908 CpG island CpG island 1231
Gm26879 1 192092355 to 192099628 7273 + antisense lncRNA gene predicted gene, 26879
Tssr15816 1 192092366 to 192092375 9 - TSS region transcription start site region 15816
Tssr15817 1 192092420 to 192092425 5 - TSS region transcription start site region 15817
Tssr15818 1 192092427 to 192092455 28 - TSS region transcription start site region 15818
Tssr15819 1 192092458 to 192092469 11 - TSS region transcription start site region 15819
Tssr15820 1 192092540 to 192092619 79 - TSS region transcription start site region 15820
Rcor3 1 192098546 to 192138062 39516 - protein coding gene REST corepressor 3
Tssr15821 1 192099290 to 192099293 3 - TSS region transcription start site region 15821
Tssr15822 1 192099789 to 192099791 2 - TSS region transcription start site region 15822
Cpgi1232 1 192136464 to 192138912 2448 CpG island CpG island 1232
Gm37055 1 192136689 to 192136821 132 + unclassified gene predicted gene, 37055
Gm10516 1 192136898 to 192151025 14127 + antisense lncRNA gene predicted gene 10516
Tssr15823 1 192137576 to 192137627 51 - TSS region transcription start site region 15823
Tssr15824 1 192137894 to 192137933 39 - TSS region transcription start site region 15824
Tssr15825 1 192137955 to 192137967 12 - TSS region transcription start site region 15825
Tssr15826 1 192137998 to 192138047 49 - TSS region transcription start site region 15826
Gm30956 1 192138060 to 192143983 5923 + lncRNA gene predicted gene, 30956
D1Mit511 1 192168321 to 192168463 142 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 511
Gm39745 1 192180340 to 192184078 3738 + lncRNA gene predicted gene, 39745
Cpgi1233 1 192190364 to 192191611 1247 CpG island CpG island 1233
Tssr10802 1 192190771 to 192190821 50 + TSS region transcription start site region 10802
Kcnh1 1 192190774 to 192510159 319385 + protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 1
D1Mit510 1 192417892 to 192418116 224 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 510
Hhat 1 192512828 to 192771219 258391 - protein coding gene hedgehog acyltransferase
Gm31011 1 192514824 to 192520709 5885 + lncRNA gene predicted gene, 31011
D1Mit210 1 192529010 to 192529115 105 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 210
Orch4 1 192529010 to 192529115 105 QTL autoimmune orchitis resistance 4
Tssr15827 1 192718210 to 192718213 3 - TSS region transcription start site region 15827
Tssr10803 1 192745568 to 192745573 5 + TSS region transcription start site region 10803
Gm22265 1 192745571 to 192745686 115 + snRNA gene predicted gene, 22265
Tssr10804 1 192759417 to 192759432 15 + TSS region transcription start site region 10804
Cpgi1234 1 192770478 to 192771366 888 CpG island CpG island 1234
Tssr15828 1 192771199 to 192771245 46 - TSS region transcription start site region 15828
Gm31078 1 192781701 to 192787119 5418 + lncRNA gene predicted gene, 31078
Tssr10805 1 192812176 to 192812177 1 + TSS region transcription start site region 10805
Tssr10806 1 192813038 to 192813040 2 + TSS region transcription start site region 10806
Gm38360 1 192820674 to 192821127 453 - pseudogene predicted gene, 38360
A730013G03Rik 1 192833118 to 192835214 2096 - unclassified gene RIKEN cDNA A730013G03 gene
Cpgi1235 1 192833482 to 192834216 734 CpG island CpG island 1235
Cpgi1236 1 192834373 to 192835165 792 CpG island CpG island 1236
Tssr15829 1 192834557 to 192834558 1 - TSS region transcription start site region 15829
Cpgi1237 1 192835456 to 192835693 237 CpG island CpG island 1237
Tssr10807 1 192841667 to 192841676 9 + TSS region transcription start site region 10807
Tssr10808 1 192841682 to 192841690 8 + TSS region transcription start site region 10808
1700065J18Rik 1 192841705 to 192842739 1034 + lincRNA gene RIKEN cDNA 1700065J18 gene
Sertad4 1 192844488 to 192855752 11264 - protein coding gene SERTA domain containing 4
Cpgi1238 1 192854545 to 192856172 1627 CpG island CpG island 1238
Tssr10809 1 192854916 to 192854937 21 + TSS region transcription start site region 10809
Gm15867 1 192854923 to 192856246 1323 + antisense lncRNA gene predicted gene 15867
Tssr15830 1 192855573 to 192855606 33 - TSS region transcription start site region 15830
Tssr15831 1 192855650 to 192855679 29 - TSS region transcription start site region 15831
Tssr15832 1 192855683 to 192855715 32 - TSS region transcription start site region 15832
Tssr15833 1 192855723 to 192855736 13 - TSS region transcription start site region 15833
Tssr15834 1 192855894 to 192855907 13 - TSS region transcription start site region 15834