Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:191917825-193366219

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mptp1 1 171804480 to 192998742 21194262 QTL MPTP sensitivity 1
Aaj1 1 181004752 to 192168463 11163711 QTL anxiety in A/J 1
Axtq1 1 181004752 to 192168463 11163711 QTL anxiety QTL 1
Gm39742 1 191928570 to 191930235 1665 + lncRNA gene predicted gene, 39742
Tssr10795 1 191928588 to 191928611 23 + TSS region transcription start site region 10795
Tssr10796 1 191928641 to 191928650 9 + TSS region transcription start site region 10796
Gm39743 1 191937883 to 191941047 3164 + protein coding gene predicted gene, 39743
Tssr378 1 191957906 to 191957910 4 + TSS region transcription start site region 378
Tssr10797 1 191977368 to 191977389 21 + TSS region transcription start site region 10797
Rd3 1 191977370 to 191988283 10913 + protein coding gene retinal degeneration 3
Tssr10798 1 191977393 to 191977400 7 + TSS region transcription start site region 10798
Tssr10799 1 191977401 to 191977445 44 + TSS region transcription start site region 10799
Tssr10800 1 191978247 to 191978259 12 + TSS region transcription start site region 10800
Tssr10801 1 191978284 to 191978291 7 + TSS region transcription start site region 10801
Cpgi1229 1 191985177 to 191985586 409 CpG island CpG island 1229
Gm26670 1 191986832 to 191990138 3306 - antisense lncRNA gene predicted gene, 26670
Cpgi1230 1 191989858 to 191990295 437 CpG island CpG island 1230
Tssr15808 1 191990142 to 191990155 13 - TSS region transcription start site region 15808
Gm32460 1 191992861 to 191993092 231 + pseudogene predicted gene, 32460
Traf5 1 191997205 to 192092559 95354 - protein coding gene TNF receptor-associated factor 5
Mir3473c 1 191998554 to 191998634 80 - miRNA gene microRNA 3473c
D1Mit463 1 191998812 to 191998936 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 463
Tssr15809 1 192061722 to 192061736 14 - TSS region transcription start site region 15809
Tssr15810 1 192061823 to 192061844 21 - TSS region transcription start site region 15810
Tssr15811 1 192064611 to 192064641 30 - TSS region transcription start site region 15811
Gstp-ps 1 192073820 to 192074450 630 - pseudogene glutathione S-transferase, pi, pseudogene
Tssr15812 1 192074013 to 192074036 23 - TSS region transcription start site region 15812
Tssr15813 1 192074322 to 192074353 31 - TSS region transcription start site region 15813
Tssr15814 1 192074466 to 192074491 25 - TSS region transcription start site region 15814
Tssr15815 1 192074523 to 192074529 6 - TSS region transcription start site region 15815
Cpgi1231 1 192091884 to 192092792 908 CpG island CpG island 1231
Gm26879 1 192092355 to 192099628 7273 + antisense lncRNA gene predicted gene, 26879
Tssr15816 1 192092366 to 192092375 9 - TSS region transcription start site region 15816
Tssr15817 1 192092420 to 192092425 5 - TSS region transcription start site region 15817
Tssr15818 1 192092427 to 192092455 28 - TSS region transcription start site region 15818
Tssr15819 1 192092458 to 192092469 11 - TSS region transcription start site region 15819
Tssr15820 1 192092540 to 192092619 79 - TSS region transcription start site region 15820
Rcor3 1 192098546 to 192138062 39516 - protein coding gene REST corepressor 3
Tssr15821 1 192099290 to 192099293 3 - TSS region transcription start site region 15821
Tssr15822 1 192099789 to 192099791 2 - TSS region transcription start site region 15822
Cpgi1232 1 192136464 to 192138912 2448 CpG island CpG island 1232
Gm37055 1 192136689 to 192136821 132 + unclassified gene predicted gene, 37055
Gm10516 1 192136898 to 192151025 14127 + antisense lncRNA gene predicted gene 10516
Tssr15823 1 192137576 to 192137627 51 - TSS region transcription start site region 15823
Tssr15824 1 192137894 to 192137933 39 - TSS region transcription start site region 15824
Tssr15825 1 192137955 to 192137967 12 - TSS region transcription start site region 15825
Tssr15826 1 192137998 to 192138047 49 - TSS region transcription start site region 15826
Gm30956 1 192138060 to 192143983 5923 + lncRNA gene predicted gene, 30956
D1Mit511 1 192168321 to 192168463 142 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 511
Gm39745 1 192180340 to 192184078 3738 + lncRNA gene predicted gene, 39745
Cpgi1233 1 192190364 to 192191611 1247 CpG island CpG island 1233
Tssr10802 1 192190771 to 192190821 50 + TSS region transcription start site region 10802
Kcnh1 1 192190774 to 192510159 319385 + protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 1
D1Mit510 1 192417892 to 192418116 224 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 510
Hhat 1 192512828 to 192771219 258391 - protein coding gene hedgehog acyltransferase
Gm31011 1 192514824 to 192520709 5885 + lncRNA gene predicted gene, 31011
D1Mit210 1 192529010 to 192529115 105 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 210
Orch4 1 192529010 to 192529115 105 QTL autoimmune orchitis resistance 4
Tssr15827 1 192718210 to 192718213 3 - TSS region transcription start site region 15827
Tssr10803 1 192745568 to 192745573 5 + TSS region transcription start site region 10803
Gm22265 1 192745571 to 192745686 115 + snRNA gene predicted gene, 22265
Tssr10804 1 192759417 to 192759432 15 + TSS region transcription start site region 10804
Cpgi1234 1 192770478 to 192771366 888 CpG island CpG island 1234
Tssr15828 1 192771199 to 192771245 46 - TSS region transcription start site region 15828
Gm31078 1 192781701 to 192787119 5418 + lncRNA gene predicted gene, 31078
Tssr10805 1 192812176 to 192812177 1 + TSS region transcription start site region 10805
Tssr10806 1 192813038 to 192813040 2 + TSS region transcription start site region 10806
Gm38360 1 192820674 to 192821127 453 - pseudogene predicted gene, 38360
A730013G03Rik 1 192833118 to 192835214 2096 - unclassified gene RIKEN cDNA A730013G03 gene
Cpgi1235 1 192833482 to 192834216 734 CpG island CpG island 1235
Cpgi1236 1 192834373 to 192835165 792 CpG island CpG island 1236
Tssr15829 1 192834557 to 192834558 1 - TSS region transcription start site region 15829
Cpgi1237 1 192835456 to 192835693 237 CpG island CpG island 1237
Tssr10807 1 192841667 to 192841676 9 + TSS region transcription start site region 10807
Tssr10808 1 192841682 to 192841690 8 + TSS region transcription start site region 10808
1700065J18Rik 1 192841705 to 192842739 1034 + lincRNA gene RIKEN cDNA 1700065J18 gene
Sertad4 1 192844488 to 192855752 11264 - protein coding gene SERTA domain containing 4
Cpgi1238 1 192854545 to 192856172 1627 CpG island CpG island 1238
Tssr10809 1 192854916 to 192854937 21 + TSS region transcription start site region 10809
Gm15867 1 192854923 to 192856246 1323 + antisense lncRNA gene predicted gene 15867
Tssr15830 1 192855573 to 192855606 33 - TSS region transcription start site region 15830
Tssr15831 1 192855650 to 192855679 29 - TSS region transcription start site region 15831
Tssr15832 1 192855683 to 192855715 32 - TSS region transcription start site region 15832
Tssr15833 1 192855723 to 192855736 13 - TSS region transcription start site region 15833
Tssr15834 1 192855894 to 192855907 13 - TSS region transcription start site region 15834
Gm2367 1 192888571 to 192889042 471 + pseudogene predicted gene 2367
Syt14 1 192891233 to 193035775 144542 - protein coding gene synaptotagmin XIV
Tssr10810 1 192892875 to 192892880 5 + TSS region transcription start site region 10810
Gm39746 1 192918061 to 192923113 5052 - lncRNA gene predicted gene, 39746
Tssr15835 1 192992453 to 192992466 13 - TSS region transcription start site region 15835
Gm23583 1 192998286 to 192998574 288 - unclassified non-coding RNA gene predicted gene, 23583
D1Mit293 1 192998594 to 192998742 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 293
Cpgi1239 1 193034908 to 193036328 1420 CpG island CpG island 1239
Tssr15836 1 193035651 to 193035728 77 - TSS region transcription start site region 15836
Tssr15837 1 193035756 to 193035830 74 - TSS region transcription start site region 15837
Gm31406 1 193040973 to 193042405 1432 - lincRNA gene predicted gene, 31406
Gm39747 1 193048660 to 193100390 51730 + lncRNA gene predicted gene, 39747
Gm37103 1 193052500 to 193052614 114 + pseudogene predicted gene, 37103
Utp25 1 193104403 to 193130251 25848 - protein coding gene UTP25 small subunit processome component
Cpgi1240 1 193129733 to 193130453 720 CpG island CpG island 1240
Tssr15838 1 193130201 to 193130257 56 - TSS region transcription start site region 15838
Tssr15839 1 193130258 to 193130271 13 - TSS region transcription start site region 15839
Tssr10811 1 193145284 to 193145296 12 + TSS region transcription start site region 10811
Cpgi1241 1 193152813 to 193153519 706 CpG island CpG island 1241
Tssr10812 1 193153107 to 193153116 9 + TSS region transcription start site region 10812
Irf6 1 193153111 to 193172023 18912 + protein coding gene interferon regulatory factor 6
Tssr10813 1 193153121 to 193153165 44 + TSS region transcription start site region 10813
Tssr10814 1 193153167 to 193153179 12 + TSS region transcription start site region 10814
Tssr10815 1 193153189 to 193153199 10 + TSS region transcription start site region 10815
Tssr10816 1 193156663 to 193156678 15 + TSS region transcription start site region 10816
Tssr10817 1 193156765 to 193156813 48 + TSS region transcription start site region 10817
Cpgi1242 1 193173213 to 193173993 780 CpG island CpG island 1242
Tssr15840 1 193173375 to 193173389 14 - TSS region transcription start site region 15840
Tssr15841 1 193173398 to 193173418 20 - TSS region transcription start site region 15841
A130010J15Rik 1 193173469 to 193177837 4368 + protein coding gene RIKEN cDNA A130010J15 gene
Tssr10818 1 193173574 to 193173595 21 + TSS region transcription start site region 10818
Tssr10819 1 193173736 to 193173757 21 + TSS region transcription start site region 10819
Traf3ip3 1 193175504 to 193201546 26042 - protein coding gene TRAF3 interacting protein 3
Tssr10820 1 193187257 to 193187307 50 + TSS region transcription start site region 10820
Gm15872 1 193187274 to 193192379 5105 + antisense lncRNA gene predicted gene 15872
Tssr15842 1 193197893 to 193197906 13 - TSS region transcription start site region 15842
Tssr15843 1 193197950 to 193198031 81 - TSS region transcription start site region 15843
Tssr15844 1 193201137 to 193201158 21 - TSS region transcription start site region 15844
Tssr15845 1 193201394 to 193201417 23 - TSS region transcription start site region 15845
Tssr15846 1 193201435 to 193201584 149 - TSS region transcription start site region 15846
Tssr15847 1 193201597 to 193201608 11 - TSS region transcription start site region 15847
4930570N18Rik 1 193203038 to 193226208 23170 + antisense lncRNA gene RIKEN cDNA 4930570N18 gene
Tssr10821 1 193207708 to 193207730 22 + TSS region transcription start site region 10821
Hsd11b1 1 193221640 to 193264049 42409 - protein coding gene hydroxysteroid 11-beta dehydrogenase 1
D1Mit512 1 193241186 to 193241301 115 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 512
Tssr15848 1 193241507 to 193241533 26 - TSS region transcription start site region 15848
Tssr15849 1 193242346 to 193242368 22 - TSS region transcription start site region 15849
Tssr15850 1 193242426 to 193242433 7 - TSS region transcription start site region 15850
Gm38118 1 193259616 to 193261837 2221 - unclassified gene predicted gene, 38118
Tssr15851 1 193263993 to 193264004 11 - TSS region transcription start site region 15851
Tssr15852 1 193264006 to 193264079 73 - TSS region transcription start site region 15852
G0s2 1 193272160 to 193273188 1028 - protein coding gene G0/G1 switch gene 2
Cpgi1243 1 193272467 to 193272751 284 CpG island CpG island 1243
Tssr15853 1 193273099 to 193273117 18 - TSS region transcription start site region 15853
Tssr10822 1 193274601 to 193274612 11 + TSS region transcription start site region 10822
Tssr15854 1 193275083 to 193275090 7 - TSS region transcription start site region 15854
Gm37691 1 193281271 to 193283843 2572 + unclassified gene predicted gene, 37691
Gm37650 1 193289766 to 193290889 1123 - antisense lncRNA gene predicted gene, 37650
Lamb3 1 193294353 to 193343878 49525 + protein coding gene laminin, beta 3
Tssr10823 1 193301953 to 193301960 7 + TSS region transcription start site region 10823
Tssr10824 1 193301970 to 193301990 20 + TSS region transcription start site region 10824
Tssr10825 1 193301991 to 193301996 5 + TSS region transcription start site region 10825
Tssr10826 1 193301999 to 193302029 30 + TSS region transcription start site region 10826
Tssr10827 1 193302035 to 193302047 12 + TSS region transcription start site region 10827
Tssr10828 1 193302066 to 193302082 16 + TSS region transcription start site region 10828
Tssr10829 1 193303373 to 193303386 13 + TSS region transcription start site region 10829
Tssr10830 1 193326003 to 193326006 3 + TSS region transcription start site region 10830
Cpgi1244 1 193330055 to 193330270 215 CpG island CpG island 1244
Tssr10831 1 193332278 to 193332285 7 + TSS region transcription start site region 10831
Tssr10832 1 193334954 to 193334965 11 + TSS region transcription start site region 10832
Tssr379 1 193338568 to 193338587 19 + TSS region transcription start site region 379
Camk1g 1 193346346 to 193370298 23952 - protein coding gene calcium/calmodulin-dependent protein kinase I gamma
Tssr380 1 193360039 to 193360043 4 + TSS region transcription start site region 380