Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:191785177-192185586

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aaj1 1 181004752 to 192168463 11163711 QTL anxiety in A/J 1
Axtq1 1 181004752 to 192168463 11163711 QTL anxiety QTL 1
Gm20203 1 191790983 to 191791314 331 - pseudogene predicted gene, 20203
Tssr15802 1 191791368 to 191791375 7 - TSS region transcription start site region 15802
Tssr15803 1 191791402 to 191791403 1 - TSS region transcription start site region 15803
Tssr10786 1 191817385 to 191817401 16 + TSS region transcription start site region 10786
5430414B12Rik 1 191817395 to 191819541 2146 lncRNA gene RIKEN cDNA 5430414B12 gene
Tssr10787 1 191817439 to 191817452 13 + TSS region transcription start site region 10787
Tssr10788 1 191817467 to 191817478 11 + TSS region transcription start site region 10788
Gm38037 1 191820370 to 191821993 1623 - antisense lncRNA gene predicted gene, 38037
Cpgi1226 1 191820988 to 191822225 1237 CpG island CpG island 1226
Nek2 1 191821444 to 191833050 11606 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 2
Tssr10789 1 191821476 to 191821489 13 + TSS region transcription start site region 10789
Tssr10790 1 191821492 to 191821568 76 + TSS region transcription start site region 10790
Gm20585 1 191827909 to 191828606 697 + pseudogene predicted gene, 20585
Cpgi1227 1 191834852 to 191835124 272 CpG island CpG island 1227
Tssr15804 1 191872180 to 191872193 13 - TSS region transcription start site region 15804
Tssr15805 1 191872196 to 191872211 15 - TSS region transcription start site region 15805
1700034H15Rik 1 191894072 to 191907527 13455 - antisense lncRNA gene RIKEN cDNA 1700034H15 gene
Tssr15806 1 191899177 to 191899208 31 - TSS region transcription start site region 15806
Cpgi1228 1 191905958 to 191907921 1963 CpG island CpG island 1228
Tssr10791 1 191906743 to 191906767 24 + TSS region transcription start site region 10791
Slc30a1 1 191906767 to 191913247 6480 + protein coding gene solute carrier family 30 (zinc transporter), member 1
Tssr10792 1 191906776 to 191906795 19 + TSS region transcription start site region 10792
Tssr10793 1 191906807 to 191906823 16 + TSS region transcription start site region 10793
Tssr15807 1 191907582 to 191907607 25 - TSS region transcription start site region 15807
Tssr10794 1 191911689 to 191911692 3 + TSS region transcription start site region 10794
Gm39742 1 191928570 to 191930235 1665 + lncRNA gene predicted gene, 39742
Tssr10795 1 191928588 to 191928611 23 + TSS region transcription start site region 10795
Tssr10796 1 191928641 to 191928650 9 + TSS region transcription start site region 10796
Gm39743 1 191937883 to 191941047 3164 + protein coding gene predicted gene, 39743
Tssr378 1 191957906 to 191957910 4 + TSS region transcription start site region 378
Tssr10797 1 191977368 to 191977389 21 + TSS region transcription start site region 10797
Rd3 1 191977370 to 191988283 10913 + protein coding gene retinal degeneration 3
Tssr10798 1 191977393 to 191977400 7 + TSS region transcription start site region 10798
Tssr10799 1 191977401 to 191977445 44 + TSS region transcription start site region 10799
Tssr10800 1 191978247 to 191978259 12 + TSS region transcription start site region 10800
Tssr10801 1 191978284 to 191978291 7 + TSS region transcription start site region 10801
Cpgi1229 1 191985177 to 191985586 409 CpG island CpG island 1229
Gm26670 1 191986832 to 191990138 3306 - antisense lncRNA gene predicted gene, 26670
Cpgi1230 1 191989858 to 191990295 437 CpG island CpG island 1230
Tssr15808 1 191990142 to 191990155 13 - TSS region transcription start site region 15808
Gm32460 1 191992861 to 191993092 231 + pseudogene predicted gene, 32460
Traf5 1 191997205 to 192092559 95354 - protein coding gene TNF receptor-associated factor 5
Mir3473c 1 191998554 to 191998634 80 - miRNA gene microRNA 3473c
D1Mit463 1 191998812 to 191998936 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 463
Tssr15809 1 192061722 to 192061736 14 - TSS region transcription start site region 15809
Tssr15810 1 192061823 to 192061844 21 - TSS region transcription start site region 15810
Tssr15811 1 192064611 to 192064641 30 - TSS region transcription start site region 15811
Gstp-ps 1 192073820 to 192074450 630 - pseudogene glutathione S-transferase, pi, pseudogene
Tssr15812 1 192074013 to 192074036 23 - TSS region transcription start site region 15812
Tssr15813 1 192074322 to 192074353 31 - TSS region transcription start site region 15813
Tssr15814 1 192074466 to 192074491 25 - TSS region transcription start site region 15814
Tssr15815 1 192074523 to 192074529 6 - TSS region transcription start site region 15815
Cpgi1231 1 192091884 to 192092792 908 CpG island CpG island 1231
Gm26879 1 192092355 to 192099628 7273 + antisense lncRNA gene predicted gene, 26879
Tssr15816 1 192092366 to 192092375 9 - TSS region transcription start site region 15816
Tssr15817 1 192092420 to 192092425 5 - TSS region transcription start site region 15817
Tssr15818 1 192092427 to 192092455 28 - TSS region transcription start site region 15818
Tssr15819 1 192092458 to 192092469 11 - TSS region transcription start site region 15819
Tssr15820 1 192092540 to 192092619 79 - TSS region transcription start site region 15820
Rcor3 1 192098546 to 192138062 39516 - protein coding gene REST corepressor 3
Tssr15821 1 192099290 to 192099293 3 - TSS region transcription start site region 15821
Tssr15822 1 192099789 to 192099791 2 - TSS region transcription start site region 15822
Cpgi1232 1 192136464 to 192138912 2448 CpG island CpG island 1232
Gm37055 1 192136689 to 192136821 132 + unclassified gene predicted gene, 37055
Gm10516 1 192136898 to 192151025 14127 + antisense lncRNA gene predicted gene 10516
Tssr15823 1 192137576 to 192137627 51 - TSS region transcription start site region 15823
Tssr15824 1 192137894 to 192137933 39 - TSS region transcription start site region 15824
Tssr15825 1 192137955 to 192137967 12 - TSS region transcription start site region 15825
Tssr15826 1 192137998 to 192138047 49 - TSS region transcription start site region 15826
Gm30956 1 192138060 to 192143983 5923 + lncRNA gene predicted gene, 30956
D1Mit511 1 192168321 to 192168463 142 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 511
Gm39745 1 192180340 to 192184078 3738 + lncRNA gene predicted gene, 39745