Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:191717180-192027193

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi1225 1 191717704 to 191719534 1830 CpG island CpG island 1225
Lpgat1 1 191717834 to 191784255 66421 + protein coding gene lysophosphatidylglycerol acyltransferase 1
Tssr10776 1 191717880 to 191717904 24 + TSS region transcription start site region 10776
Tssr10777 1 191717993 to 191718030 37 + TSS region transcription start site region 10777
Tssr10778 1 191718035 to 191718061 26 + TSS region transcription start site region 10778
Tssr10779 1 191718070 to 191718090 20 + TSS region transcription start site region 10779
Tssr10780 1 191718255 to 191718313 58 + TSS region transcription start site region 10780
Tssr10781 1 191718378 to 191718394 16 + TSS region transcription start site region 10781
Tssr10782 1 191718395 to 191718431 36 + TSS region transcription start site region 10782
Tssr10783 1 191719164 to 191719229 65 + TSS region transcription start site region 10783
Tssr10784 1 191743115 to 191743140 25 + TSS region transcription start site region 10784
Gm22446 1 191762200 to 191762303 103 - snRNA gene predicted gene, 22446
Gm26203 1 191772721 to 191772834 113 - snRNA gene predicted gene, 26203
Tssr10785 1 191779677 to 191779681 4 + TSS region transcription start site region 10785
Gm20203 1 191790983 to 191791314 331 - pseudogene predicted gene, 20203
Tssr15802 1 191791368 to 191791375 7 - TSS region transcription start site region 15802
Tssr15803 1 191791402 to 191791403 1 - TSS region transcription start site region 15803
Tssr10786 1 191817385 to 191817401 16 + TSS region transcription start site region 10786
5430414B12Rik 1 191817395 to 191819541 2146 lncRNA gene RIKEN cDNA 5430414B12 gene
Tssr10787 1 191817439 to 191817452 13 + TSS region transcription start site region 10787
Tssr10788 1 191817467 to 191817478 11 + TSS region transcription start site region 10788
Gm38037 1 191820370 to 191821993 1623 - antisense lncRNA gene predicted gene, 38037
Cpgi1226 1 191820988 to 191822225 1237 CpG island CpG island 1226
Nek2 1 191821444 to 191833050 11606 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 2
Tssr10789 1 191821476 to 191821489 13 + TSS region transcription start site region 10789
Tssr10790 1 191821492 to 191821568 76 + TSS region transcription start site region 10790
Gm20585 1 191827909 to 191828606 697 + pseudogene predicted gene, 20585
Cpgi1227 1 191834852 to 191835124 272 CpG island CpG island 1227
Tssr15804 1 191872180 to 191872193 13 - TSS region transcription start site region 15804
Tssr15805 1 191872196 to 191872211 15 - TSS region transcription start site region 15805
1700034H15Rik 1 191894072 to 191907527 13455 - antisense lncRNA gene RIKEN cDNA 1700034H15 gene
Tssr15806 1 191899177 to 191899208 31 - TSS region transcription start site region 15806
Cpgi1228 1 191905958 to 191907921 1963 CpG island CpG island 1228
Tssr10791 1 191906743 to 191906767 24 + TSS region transcription start site region 10791
Slc30a1 1 191906767 to 191913247 6480 + protein coding gene solute carrier family 30 (zinc transporter), member 1
Tssr10792 1 191906776 to 191906795 19 + TSS region transcription start site region 10792
Tssr10793 1 191906807 to 191906823 16 + TSS region transcription start site region 10793
Tssr15807 1 191907582 to 191907607 25 - TSS region transcription start site region 15807
Tssr10794 1 191911689 to 191911692 3 + TSS region transcription start site region 10794
Gm39742 1 191928570 to 191930235 1665 + lncRNA gene predicted gene, 39742
Tssr10795 1 191928588 to 191928611 23 + TSS region transcription start site region 10795
Tssr10796 1 191928641 to 191928650 9 + TSS region transcription start site region 10796
Gm39743 1 191937883 to 191941047 3164 + protein coding gene predicted gene, 39743
Tssr378 1 191957906 to 191957910 4 + TSS region transcription start site region 378
Tssr10797 1 191977368 to 191977389 21 + TSS region transcription start site region 10797
Rd3 1 191977370 to 191988283 10913 + protein coding gene retinal degeneration 3
Tssr10798 1 191977393 to 191977400 7 + TSS region transcription start site region 10798
Tssr10799 1 191977401 to 191977445 44 + TSS region transcription start site region 10799
Tssr10800 1 191978247 to 191978259 12 + TSS region transcription start site region 10800
Tssr10801 1 191978284 to 191978291 7 + TSS region transcription start site region 10801
Cpgi1229 1 191985177 to 191985586 409 CpG island CpG island 1229
Gm26670 1 191986832 to 191990138 3306 - antisense lncRNA gene predicted gene, 26670
Cpgi1230 1 191989858 to 191990295 437 CpG island CpG island 1230
Tssr15808 1 191990142 to 191990155 13 - TSS region transcription start site region 15808
Gm32460 1 191992861 to 191993092 231 + pseudogene predicted gene, 32460
Traf5 1 191997205 to 192092559 95354 - protein coding gene TNF receptor-associated factor 5
Mir3473c 1 191998554 to 191998634 80 - miRNA gene microRNA 3473c
D1Mit463 1 191998812 to 191998936 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 463