Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:191180636-192018688

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nobq3 1 104005680 to 191493284 87487604 QTL New Zealand obese QTL 3
Liq1 1 167758517 to 191493284 23734767 QTL limb inflammation QTL 1
Atf3 1 191170296 to 191183333 13037 - protein coding gene activating transcription factor 3
Tssr15761 1 191181566 to 191181577 11 - TSS region transcription start site region 15761
Tssr15762 1 191181967 to 191181978 11 - TSS region transcription start site region 15762
Cpgi1219 1 191182359 to 191185754 3395 CpG island CpG island 1219
Tssr10733 1 191182374 to 191182400 26 + TSS region transcription start site region 10733
Tssr15763 1 191183244 to 191183260 16 - TSS region transcription start site region 15763
Tssr10734 1 191183492 to 191183505 13 + TSS region transcription start site region 10734
Tssr10735 1 191183551 to 191183596 45 + TSS region transcription start site region 10735
Tssr10736 1 191183681 to 191183710 29 + TSS region transcription start site region 10736
Tssr15764 1 191184999 to 191185009 10 - TSS region transcription start site region 15764
Tssr10737 1 191185879 to 191185922 43 + TSS region transcription start site region 10737
Tssr15765 1 191186457 to 191186492 35 - TSS region transcription start site region 15765
Tssr10738 1 191186688 to 191186701 13 + TSS region transcription start site region 10738
Tssr15766 1 191189928 to 191189942 14 - TSS region transcription start site region 15766
Tssr10739 1 191190093 to 191190136 43 + TSS region transcription start site region 10739
Tssr10740 1 191192609 to 191192625 16 + TSS region transcription start site region 10740
Tssr10741 1 191194028 to 191194072 44 + TSS region transcription start site region 10741
Tssr10742 1 191194303 to 191194321 18 + TSS region transcription start site region 10742
Gm24748 1 191196906 to 191197013 107 + unclassified non-coding RNA gene predicted gene, 24748
Tssr15767 1 191199289 to 191199296 7 - TSS region transcription start site region 15767
Tssr15768 1 191201249 to 191201279 30 - TSS region transcription start site region 15768
Tssr10743 1 191201471 to 191201499 28 + TSS region transcription start site region 10743
Tssr15769 1 191217932 to 191217959 27 - TSS region transcription start site region 15769
Cpgi1220 1 191223843 to 191225021 1178 CpG island CpG island 1220
D730003I15Rik 1 191224408 to 191225688 1280 + lincRNA gene RIKEN cDNA D730003I15 gene
Tssr10744 1 191224443 to 191224461 18 + TSS region transcription start site region 10744
Tssr10745 1 191224462 to 191224521 59 + TSS region transcription start site region 10745
Tssr372 1 191224847 to 191224856 9 - TSS region transcription start site region 372
Tssr15770 1 191224911 to 191224969 58 - TSS region transcription start site region 15770
Tssr15771 1 191224976 to 191224987 11 - TSS region transcription start site region 15771
Tssr10746 1 191225046 to 191225062 16 + TSS region transcription start site region 10746
Tssr15772 1 191225259 to 191225265 6 - TSS region transcription start site region 15772
Tssr15773 1 191225272 to 191225286 14 - TSS region transcription start site region 15773
Tssr10747 1 191225440 to 191225467 27 + TSS region transcription start site region 10747
Tssr15774 1 191230396 to 191230424 28 - TSS region transcription start site region 15774
Tssr15775 1 191232741 to 191232748 7 - TSS region transcription start site region 15775
Tssr15776 1 191239599 to 191239608 9 - TSS region transcription start site region 15776
Tssr10748 1 191239911 to 191239916 5 + TSS region transcription start site region 10748
Tssr15777 1 191242180 to 191242203 23 - TSS region transcription start site region 15777
Tssr10749 1 191247907 to 191247941 34 + TSS region transcription start site region 10749
Gm37074 1 191249424 to 191251266 1842 + unclassified gene predicted gene, 37074
Tssr15778 1 191253738 to 191253752 14 - TSS region transcription start site region 15778
Tssr10750 1 191266813 to 191266836 23 + TSS region transcription start site region 10750
Tssr10751 1 191266854 to 191266885 31 + TSS region transcription start site region 10751
Tssr10752 1 191266886 to 191266927 41 + TSS region transcription start site region 10752
Tssr10753 1 191267004 to 191267016 12 + TSS region transcription start site region 10753
Tssr10754 1 191267052 to 191267061 9 + TSS region transcription start site region 10754
Tssr10755 1 191267077 to 191267091 14 + TSS region transcription start site region 10755
Tssr10756 1 191267125 to 191267137 12 + TSS region transcription start site region 10756
Tssr15779 1 191269316 to 191269318 2 - TSS region transcription start site region 15779
Tssr15780 1 191270172 to 191270190 18 - TSS region transcription start site region 15780
Tssr10757 1 191272612 to 191272617 5 + TSS region transcription start site region 10757
Tssr10758 1 191275831 to 191275840 9 + TSS region transcription start site region 10758
Tssr10759 1 191275952 to 191275959 7 + TSS region transcription start site region 10759
Tssr15781 1 191277615 to 191277628 13 - TSS region transcription start site region 15781
Tssr373 1 191280827 to 191280829 2 - TSS region transcription start site region 373
Tssr10760 1 191281414 to 191281417 3 + TSS region transcription start site region 10760
Tssr10761 1 191281423 to 191281437 14 + TSS region transcription start site region 10761
Tssr10762 1 191281453 to 191281464 11 + TSS region transcription start site region 10762
Tssr10763 1 191281467 to 191281479 12 + TSS region transcription start site region 10763
Tssr10764 1 191281497 to 191281502 5 + TSS region transcription start site region 10764
Gm37168 1 191287535 to 191288722 1187 + lincRNA gene predicted gene, 37168
Tssr10765 1 191290715 to 191290750 35 + TSS region transcription start site region 10765
Tssr10766 1 191299549 to 191299559 10 + TSS region transcription start site region 10766
Nenf 1 191306797 to 191318118 11321 - protein coding gene neuron derived neurotrophic factor
Cpgi1221 1 191317349 to 191318253 904 CpG island CpG island 1221
Tssr10767 1 191317873 to 191317878 5 + TSS region transcription start site region 10767
Tssr15782 1 191318090 to 191318126 36 - TSS region transcription start site region 15782
Cpgi1222 1 191325685 to 191326678 993 CpG island CpG island 1222
Tmem206 1 191325912 to 191350914 25002 + protein coding gene transmembrane protein 206
Tssr10768 1 191325919 to 191325984 65 + TSS region transcription start site region 10768
Tssr10769 1 191325985 to 191325998 13 + TSS region transcription start site region 10769
Tssr10770 1 191328144 to 191328186 42 + TSS region transcription start site region 10770
Tssr10771 1 191332095 to 191332120 25 + TSS region transcription start site region 10771
Tssr10772 1 191339453 to 191339462 9 + TSS region transcription start site region 10772
Tssr15783 1 191348306 to 191348310 4 - TSS region transcription start site region 15783
Ppp2r5a 1 191351981 to 191397041 45060 - protein coding gene protein phosphatase 2, regulatory subunit B', alpha
Tssr15784 1 191363114 to 191363121 7 - TSS region transcription start site region 15784
Tssr15785 1 191370747 to 191370762 15 - TSS region transcription start site region 15785
Tssr15786 1 191378108 to 191378113 5 - TSS region transcription start site region 15786
Rab11b-ps1 1 191388616 to 191389460 844 + pseudogene RAB11B, member RAS oncogene family, pseudogene 1
Tssr15787 1 191393687 to 191393691 4 - TSS region transcription start site region 15787
Cpgi1223 1 191395914 to 191397916 2002 CpG island CpG island 1223
Tssr374 1 191396091 to 191396127 36 - TSS region transcription start site region 374
Tssr15788 1 191396567 to 191396592 25 - TSS region transcription start site region 15788
Tssr15789 1 191396922 to 191396962 40 - TSS region transcription start site region 15789
Tssr15790 1 191397026 to 191397041 15 - TSS region transcription start site region 15790
Tssr15791 1 191397044 to 191397061 17 - TSS region transcription start site region 15791
Tssr375 1 191397208 to 191397234 26 - TSS region transcription start site region 375
Gm20201 1 191397705 to 191415085 17380 - lncRNA gene predicted gene, 20201
Tssr15792 1 191403270 to 191403273 3 - TSS region transcription start site region 15792
D1Mit292 1 191403465 to 191403660 195 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 292
Gm2272 1 191407666 to 191408247 581 + pseudogene predicted gene 2272
Gm31987 1 191420174 to 191433682 13508 - lncRNA gene predicted gene, 31987
Gm32128 1 191420844 to 191422644 1800 + lncRNA gene predicted gene, 32128
Gm32200 1 191436340 to 191465048 28708 - lincRNA gene predicted gene, 32200
Tssr15793 1 191445803 to 191445818 15 - TSS region transcription start site region 15793
Tssr15794 1 191465323 to 191465343 20 - TSS region transcription start site region 15794
Gm37688 1 191477331 to 191477795 464 + pseudogene predicted gene, 37688
Gm32334 1 191487317 to 191491677 4360 + lncRNA gene predicted gene, 32334
Gm37432 1 191490910 to 191493905 2995 - lincRNA gene predicted gene, 37432
D1Mit209 1 191493187 to 191493284 97 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 209
Tssr376 1 191507878 to 191507880 2 + TSS region transcription start site region 376
Tssr15795 1 191519831 to 191519842 11 - TSS region transcription start site region 15795
9430037O13Rik 1 191535885 to 191536892 1007 - unclassified gene RIKEN cDNA 9430037O13 gene
Tssr377 1 191536575 to 191536578 3 - TSS region transcription start site region 377
Dtl 1 191537356 to 191575544 38188 - protein coding gene denticleless E3 ubiquitin protein ligase
Tssr15796 1 191541070 to 191541083 13 - TSS region transcription start site region 15796
Tssr15797 1 191541359 to 191541366 7 - TSS region transcription start site region 15797
Tssr15798 1 191565903 to 191565913 10 - TSS region transcription start site region 15798
Cpgi1224 1 191574838 to 191576305 1467 CpG island CpG island 1224
Tssr15799 1 191575490 to 191575526 36 - TSS region transcription start site region 15799
Tssr15800 1 191575537 to 191575549 12 - TSS region transcription start site region 15800
Tssr15801 1 191575550 to 191575557 7 - TSS region transcription start site region 15801
Ints7 1 191575636 to 191623688 48052 + protein coding gene integrator complex subunit 7
Tssr10773 1 191575721 to 191575792 71 + TSS region transcription start site region 10773
Gm37349 1 191597647 to 191598270 623 + unclassified gene predicted gene, 37349
Tssr10774 1 191611795 to 191611818 23 + TSS region transcription start site region 10774
Tssr10775 1 191623313 to 191623317 4 + TSS region transcription start site region 10775
Gm39741 1 191648221 to 191649177 956 - lncRNA gene predicted gene, 39741
Cpgi1225 1 191717704 to 191719534 1830 CpG island CpG island 1225
Lpgat1 1 191717834 to 191784255 66421 + protein coding gene lysophosphatidylglycerol acyltransferase 1
Tssr10776 1 191717880 to 191717904 24 + TSS region transcription start site region 10776
Tssr10777 1 191717993 to 191718030 37 + TSS region transcription start site region 10777
Tssr10778 1 191718035 to 191718061 26 + TSS region transcription start site region 10778
Tssr10779 1 191718070 to 191718090 20 + TSS region transcription start site region 10779
Tssr10780 1 191718255 to 191718313 58 + TSS region transcription start site region 10780
Tssr10781 1 191718378 to 191718394 16 + TSS region transcription start site region 10781
Tssr10782 1 191718395 to 191718431 36 + TSS region transcription start site region 10782
Tssr10783 1 191719164 to 191719229 65 + TSS region transcription start site region 10783
Tssr10784 1 191743115 to 191743140 25 + TSS region transcription start site region 10784
Gm22446 1 191762200 to 191762303 103 - snRNA gene predicted gene, 22446
Gm26203 1 191772721 to 191772834 113 - snRNA gene predicted gene, 26203
Tssr10785 1 191779677 to 191779681 4 + TSS region transcription start site region 10785
Gm20203 1 191790983 to 191791314 331 - pseudogene predicted gene, 20203
Tssr15802 1 191791368 to 191791375 7 - TSS region transcription start site region 15802
Tssr15803 1 191791402 to 191791403 1 - TSS region transcription start site region 15803
Tssr10786 1 191817385 to 191817401 16 + TSS region transcription start site region 10786
5430414B12Rik 1 191817395 to 191819541 2146 lncRNA gene RIKEN cDNA 5430414B12 gene
Tssr10787 1 191817439 to 191817452 13 + TSS region transcription start site region 10787
Tssr10788 1 191817467 to 191817478 11 + TSS region transcription start site region 10788
Gm38037 1 191820370 to 191821993 1623 - antisense lncRNA gene predicted gene, 38037
Cpgi1226 1 191820988 to 191822225 1237 CpG island CpG island 1226
Nek2 1 191821444 to 191833050 11606 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 2
Tssr10789 1 191821476 to 191821489 13 + TSS region transcription start site region 10789
Tssr10790 1 191821492 to 191821568 76 + TSS region transcription start site region 10790
Gm20585 1 191827909 to 191828606 697 + pseudogene predicted gene, 20585
Cpgi1227 1 191834852 to 191835124 272 CpG island CpG island 1227
Tssr15804 1 191872180 to 191872193 13 - TSS region transcription start site region 15804
Tssr15805 1 191872196 to 191872211 15 - TSS region transcription start site region 15805
1700034H15Rik 1 191894072 to 191907527 13455 - antisense lncRNA gene RIKEN cDNA 1700034H15 gene
Tssr15806 1 191899177 to 191899208 31 - TSS region transcription start site region 15806
Cpgi1228 1 191905958 to 191907921 1963 CpG island CpG island 1228
Tssr10791 1 191906743 to 191906767 24 + TSS region transcription start site region 10791
Slc30a1 1 191906767 to 191913247 6480 + protein coding gene solute carrier family 30 (zinc transporter), member 1
Tssr10792 1 191906776 to 191906795 19 + TSS region transcription start site region 10792
Tssr10793 1 191906807 to 191906823 16 + TSS region transcription start site region 10793
Tssr15807 1 191907582 to 191907607 25 - TSS region transcription start site region 15807
Tssr10794 1 191911689 to 191911692 3 + TSS region transcription start site region 10794
Gm39742 1 191928570 to 191930235 1665 + lncRNA gene predicted gene, 39742
Tssr10795 1 191928588 to 191928611 23 + TSS region transcription start site region 10795
Tssr10796 1 191928641 to 191928650 9 + TSS region transcription start site region 10796
Gm39743 1 191937883 to 191941047 3164 + protein coding gene predicted gene, 39743
Tssr378 1 191957906 to 191957910 4 + TSS region transcription start site region 378
Tssr10797 1 191977368 to 191977389 21 + TSS region transcription start site region 10797
Rd3 1 191977370 to 191988283 10913 + protein coding gene retinal degeneration 3
Tssr10798 1 191977393 to 191977400 7 + TSS region transcription start site region 10798
Tssr10799 1 191977401 to 191977445 44 + TSS region transcription start site region 10799
Tssr10800 1 191978247 to 191978259 12 + TSS region transcription start site region 10800
Tssr10801 1 191978284 to 191978291 7 + TSS region transcription start site region 10801
Cpgi1229 1 191985177 to 191985586 409 CpG island CpG island 1229
Gm26670 1 191986832 to 191990138 3306 - antisense lncRNA gene predicted gene, 26670
Cpgi1230 1 191989858 to 191990295 437 CpG island CpG island 1230
Tssr15808 1 191990142 to 191990155 13 - TSS region transcription start site region 15808
Gm32460 1 191992861 to 191993092 231 + pseudogene predicted gene, 32460
Traf5 1 191997205 to 192092559 95354 - protein coding gene TNF receptor-associated factor 5
Mir3473c 1 191998554 to 191998634 80 - miRNA gene microRNA 3473c
D1Mit463 1 191998812 to 191998936 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 463