Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:190457879-191228010

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Berr1 1 164315658 to 190802075 26486417 QTL berghei resistance locus 1
Gm30815 1 190456180 to 190465694 9514 - lncRNA gene predicted gene, 30815
Tssr15736 1 190465686 to 190465699 13 - TSS region transcription start site region 15736
Gm23153 1 190482845 to 190483157 312 - unclassified non-coding RNA gene predicted gene, 23153
Gm47294 1 190482929 to 190483016 87 - miRNA gene predicted gene, 47294
Cpgi1208 1 190483146 to 190483384 238 CpG island CpG island 1208
Gm30932 1 190594268 to 190597119 2851 + lincRNA gene predicted gene, 30932
Tssr10707 1 190594300 to 190594314 14 + TSS region transcription start site region 10707
Tssr10708 1 190596535 to 190596554 19 + TSS region transcription start site region 10708
Tssr10709 1 190596561 to 190596584 23 + TSS region transcription start site region 10709
Tssr15737 1 190617472 to 190617473 1 - TSS region transcription start site region 15737
Cpgi1209 1 190682105 to 190682426 321 CpG island CpG island 1209
Cpgi1210 1 190690541 to 190690925 384 CpG island CpG island 1210
Gm38452 1 190700216 to 190729672 29456 - lncRNA gene predicted gene, 38452
Tssr10710 1 190714077 to 190714079 2 + TSS region transcription start site region 10710
Gm39738 1 190760656 to 190765573 4917 + lncRNA gene predicted gene, 39738
Tssr10711 1 190760957 to 190760966 9 + TSS region transcription start site region 10711
Rps6kc1 1 190772879 to 190912140 139261 - protein coding gene ribosomal protein S6 kinase polypeptide 1
D1Mit462 1 190801955 to 190802075 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 462
D1Mit462.2 1 190802070 to 190802270 200 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 462.2
Cpgi1211 1 190911443 to 190912216 773 CpG island CpG island 1211
Tssr15738 1 190911708 to 190911719 11 - TSS region transcription start site region 15738
Tssr15739 1 190911728 to 190911802 74 - TSS region transcription start site region 15739
Tssr15740 1 190911803 to 190911810 7 - TSS region transcription start site region 15740
Tssr10712 1 190911803 to 190911832 29 + TSS region transcription start site region 10712
Tssr10713 1 190911865 to 190911873 8 + TSS region transcription start site region 10713
Tssr10714 1 190916735 to 190916739 4 + TSS region transcription start site region 10714
Angel2 1 190925112 to 190946962 21850 + protein coding gene angel homolog 2
Cpgi1212 1 190928176 to 190929233 1057 CpG island CpG island 1212
Tssr10715 1 190928501 to 190928550 49 + TSS region transcription start site region 10715
Tssr10716 1 190928573 to 190928652 79 + TSS region transcription start site region 10716
Tssr10717 1 190928829 to 190928888 59 + TSS region transcription start site region 10717
Tssr10718 1 190942410 to 190942413 3 + TSS region transcription start site region 10718
Vash2 1 190947646 to 190979296 31650 - protein coding gene vasohibin 2
Cpgi1213 1 190949063 to 190949336 273 CpG island CpG island 1213
Cpgi1214 1 190978027 to 190979608 1581 CpG island CpG island 1214
Tssr15741 1 190978954 to 190978998 44 - TSS region transcription start site region 15741
Tssr15742 1 190979144 to 190979154 10 - TSS region transcription start site region 15742
Tssr15743 1 190979160 to 190979178 18 - TSS region transcription start site region 15743
Tssr15744 1 190979183 to 190979190 7 - TSS region transcription start site region 15744
Tssr15745 1 190979195 to 190979232 37 - TSS region transcription start site region 15745
Tssr15746 1 190979261 to 190979272 11 - TSS region transcription start site region 15746
Tssr15747 1 190979280 to 190979302 22 - TSS region transcription start site region 15747
Gm31373 1 190992692 to 190994677 1985 + lincRNA gene predicted gene, 31373
Tssr10719 1 190992795 to 190992835 40 + TSS region transcription start site region 10719
Gm37095 1 191000594 to 191000798 204 - pseudogene predicted gene, 37095
Gm8407 1 191001425 to 191001851 426 - pseudogene predicted gene 8407
Flvcr1 1 191005847 to 191026158 20311 - protein coding gene feline leukemia virus subgroup C cellular receptor 1
Tssr15748 1 191020393 to 191020405 12 - TSS region transcription start site region 15748
Cpgi1215 1 191025124 to 191026682 1558 CpG island CpG island 1215
A230020J21Rik 1 191025351 to 191029781 4430 + antisense lncRNA gene RIKEN cDNA A230020J21 gene
Tssr15749 1 191026013 to 191026036 23 - TSS region transcription start site region 15749
Tssr15750 1 191026181 to 191026197 16 - TSS region transcription start site region 15750
Spata45 1 191036639 to 191042942 6303 + protein coding gene spermatogenesis associated 45
Tssr10720 1 191036812 to 191036825 13 + TSS region transcription start site region 10720
Tssr10721 1 191036829 to 191036838 9 + TSS region transcription start site region 10721
Tatdn3 1 191045826 to 191062932 17106 - protein coding gene TatD DNase domain containing 3
Cpgi1216 1 191062599 to 191063513 914 CpG island CpG island 1216
Tssr15751 1 191062876 to 191062887 11 - TSS region transcription start site region 15751
Tssr15752 1 191062896 to 191062911 15 - TSS region transcription start site region 15752
Nsl1 1 191062993 to 191084558 21565 + protein coding gene NSL1, MIS12 kinetochore complex component
Tssr10722 1 191063001 to 191063038 37 + TSS region transcription start site region 10722
Tssr10723 1 191069193 to 191069199 6 + TSS region transcription start site region 10723
Gm38188 1 191077825 to 191078680 855 - antisense lncRNA gene predicted gene, 38188
Tssr10724 1 191085853 to 191085881 28 + TSS region transcription start site region 10724
Tssr15753 1 191096092 to 191096098 6 - TSS region transcription start site region 15753
Tssr15754 1 191096232 to 191096275 43 - TSS region transcription start site region 15754
Cpgi1217 1 191097699 to 191098900 1201 CpG island CpG island 1217
Tssr10725 1 191097833 to 191097859 26 + TSS region transcription start site region 10725
Tssr10726 1 191097866 to 191097887 21 + TSS region transcription start site region 10726
Tssr10727 1 191097892 to 191097904 12 + TSS region transcription start site region 10727
Tssr15755 1 191098225 to 191098290 65 - TSS region transcription start site region 15755
Tssr10728 1 191098406 to 191098436 30 + TSS region transcription start site region 10728
Batf3 1 191098414 to 191108943 10529 + protein coding gene basic leucine zipper transcription factor, ATF-like 3
Tssr15756 1 191111959 to 191111971 12 - TSS region transcription start site region 15756
Gm46178 1 191120902 to 191125328 4426 + lncRNA gene predicted gene, 46178
Tssr10729 1 191121036 to 191121047 11 + TSS region transcription start site region 10729
Tssr10730 1 191121049 to 191121078 29 + TSS region transcription start site region 10730
Cpgi1218 1 191125832 to 191126260 428 CpG island CpG island 1218
Gm31640 1 191130198 to 191132797 2599 - lncRNA gene predicted gene, 31640
Gm38161 1 191132657 to 191134014 1357 + lincRNA gene predicted gene, 38161
Gm31696 1 191137983 to 191139839 1856 - lncRNA gene predicted gene, 31696
Fam71a 1 191162584 to 191164817 2233 - protein coding gene family with sequence similarity 71, member A
Tssr15757 1 191164815 to 191164818 3 - TSS region transcription start site region 15757
Atf3 1 191170296 to 191183333 13037 - protein coding gene activating transcription factor 3
Tssr10731 1 191171610 to 191171648 38 + TSS region transcription start site region 10731
Tssr10732 1 191172364 to 191172411 47 + TSS region transcription start site region 10732
Tssr15758 1 191176709 to 191176731 22 - TSS region transcription start site region 15758
Tssr15759 1 191177133 to 191177145 12 - TSS region transcription start site region 15759
Tssr15760 1 191177361 to 191177379 18 - TSS region transcription start site region 15760
Tssr15761 1 191181566 to 191181577 11 - TSS region transcription start site region 15761
Tssr15762 1 191181967 to 191181978 11 - TSS region transcription start site region 15762
Cpgi1219 1 191182359 to 191185754 3395 CpG island CpG island 1219
Tssr10733 1 191182374 to 191182400 26 + TSS region transcription start site region 10733
Tssr15763 1 191183244 to 191183260 16 - TSS region transcription start site region 15763
Tssr10734 1 191183492 to 191183505 13 + TSS region transcription start site region 10734
Tssr10735 1 191183551 to 191183596 45 + TSS region transcription start site region 10735
Tssr10736 1 191183681 to 191183710 29 + TSS region transcription start site region 10736
Tssr15764 1 191184999 to 191185009 10 - TSS region transcription start site region 15764
Tssr10737 1 191185879 to 191185922 43 + TSS region transcription start site region 10737
Tssr15765 1 191186457 to 191186492 35 - TSS region transcription start site region 15765
Tssr10738 1 191186688 to 191186701 13 + TSS region transcription start site region 10738
Tssr15766 1 191189928 to 191189942 14 - TSS region transcription start site region 15766
Tssr10739 1 191190093 to 191190136 43 + TSS region transcription start site region 10739
Tssr10740 1 191192609 to 191192625 16 + TSS region transcription start site region 10740
Tssr10741 1 191194028 to 191194072 44 + TSS region transcription start site region 10741
Tssr10742 1 191194303 to 191194321 18 + TSS region transcription start site region 10742
Gm24748 1 191196906 to 191197013 107 + unclassified non-coding RNA gene predicted gene, 24748
Tssr15767 1 191199289 to 191199296 7 - TSS region transcription start site region 15767
Tssr15768 1 191201249 to 191201279 30 - TSS region transcription start site region 15768
Tssr10743 1 191201471 to 191201499 28 + TSS region transcription start site region 10743
Tssr15769 1 191217932 to 191217959 27 - TSS region transcription start site region 15769
Cpgi1220 1 191223843 to 191225021 1178 CpG island CpG island 1220
D730003I15Rik 1 191224408 to 191225688 1280 + lincRNA gene RIKEN cDNA D730003I15 gene
Tssr10744 1 191224443 to 191224461 18 + TSS region transcription start site region 10744
Tssr10745 1 191224462 to 191224521 59 + TSS region transcription start site region 10745
Tssr372 1 191224847 to 191224856 9 - TSS region transcription start site region 372
Tssr15770 1 191224911 to 191224969 58 - TSS region transcription start site region 15770
Tssr15771 1 191224976 to 191224987 11 - TSS region transcription start site region 15771
Tssr10746 1 191225046 to 191225062 16 + TSS region transcription start site region 10746
Tssr15772 1 191225259 to 191225265 6 - TSS region transcription start site region 15772
Tssr15773 1 191225272 to 191225286 14 - TSS region transcription start site region 15773
Tssr10747 1 191225440 to 191225467 27 + TSS region transcription start site region 10747