Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:190209300-190979314

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Berr1 1 164315658 to 190802075 26486417 QTL berghei resistance locus 1
Prox1os 1 190170296 to 190217276 46980 + antisense lncRNA gene prospero homeobox 1, opposite strand
D1Mit241 1 190350775 to 190350908 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 241
Gm39737 1 190391763 to 190398524 6761 - lncRNA gene predicted gene, 39737
Gm29678 1 190403645 to 190417145 13500 + lincRNA gene predicted gene, 29678
Gm30725 1 190419333 to 190444855 25522 - lincRNA gene predicted gene, 30725
Gm30815 1 190456180 to 190465694 9514 - lncRNA gene predicted gene, 30815
Tssr15736 1 190465686 to 190465699 13 - TSS region transcription start site region 15736
Gm23153 1 190482845 to 190483157 312 - unclassified non-coding RNA gene predicted gene, 23153
Gm47294 1 190482929 to 190483016 87 - miRNA gene predicted gene, 47294
Cpgi1208 1 190483146 to 190483384 238 CpG island CpG island 1208
Gm30932 1 190594268 to 190597119 2851 + lincRNA gene predicted gene, 30932
Tssr10707 1 190594300 to 190594314 14 + TSS region transcription start site region 10707
Tssr10708 1 190596535 to 190596554 19 + TSS region transcription start site region 10708
Tssr10709 1 190596561 to 190596584 23 + TSS region transcription start site region 10709
Tssr15737 1 190617472 to 190617473 1 - TSS region transcription start site region 15737
Cpgi1209 1 190682105 to 190682426 321 CpG island CpG island 1209
Cpgi1210 1 190690541 to 190690925 384 CpG island CpG island 1210
Gm38452 1 190700216 to 190729672 29456 - lncRNA gene predicted gene, 38452
Tssr10710 1 190714077 to 190714079 2 + TSS region transcription start site region 10710
Gm39738 1 190760656 to 190765573 4917 + lncRNA gene predicted gene, 39738
Tssr10711 1 190760957 to 190760966 9 + TSS region transcription start site region 10711
Rps6kc1 1 190772879 to 190912140 139261 - protein coding gene ribosomal protein S6 kinase polypeptide 1
D1Mit462 1 190801955 to 190802075 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 462
D1Mit462.2 1 190802070 to 190802270 200 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 462.2
Cpgi1211 1 190911443 to 190912216 773 CpG island CpG island 1211
Tssr15738 1 190911708 to 190911719 11 - TSS region transcription start site region 15738
Tssr15739 1 190911728 to 190911802 74 - TSS region transcription start site region 15739
Tssr10712 1 190911803 to 190911832 29 + TSS region transcription start site region 10712
Tssr15740 1 190911803 to 190911810 7 - TSS region transcription start site region 15740
Tssr10713 1 190911865 to 190911873 8 + TSS region transcription start site region 10713
Tssr10714 1 190916735 to 190916739 4 + TSS region transcription start site region 10714
Angel2 1 190925112 to 190946962 21850 + protein coding gene angel homolog 2
Cpgi1212 1 190928176 to 190929233 1057 CpG island CpG island 1212
Tssr10715 1 190928501 to 190928550 49 + TSS region transcription start site region 10715
Tssr10716 1 190928573 to 190928652 79 + TSS region transcription start site region 10716
Tssr10717 1 190928829 to 190928888 59 + TSS region transcription start site region 10717
Tssr10718 1 190942410 to 190942413 3 + TSS region transcription start site region 10718
Vash2 1 190947646 to 190979296 31650 - protein coding gene vasohibin 2
Cpgi1213 1 190949063 to 190949336 273 CpG island CpG island 1213
Cpgi1214 1 190978027 to 190979608 1581 CpG island CpG island 1214
Tssr15741 1 190978954 to 190978998 44 - TSS region transcription start site region 15741
Tssr15742 1 190979144 to 190979154 10 - TSS region transcription start site region 15742
Tssr15743 1 190979160 to 190979178 18 - TSS region transcription start site region 15743
Tssr15744 1 190979183 to 190979190 7 - TSS region transcription start site region 15744
Tssr15745 1 190979195 to 190979232 37 - TSS region transcription start site region 15745
Tssr15746 1 190979261 to 190979272 11 - TSS region transcription start site region 15746
Tssr15747 1 190979280 to 190979302 22 - TSS region transcription start site region 15747