Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:190158146-190808384

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Berr1 1 164315658 to 190802075 26486417 QTL berghei resistance locus 1
Prox1 1 190118035 to 190170680 52645 - protein coding gene prospero homeobox 1
Tssr10701 1 190159792 to 190159817 25 + TSS region transcription start site region 10701
Cpgi1203 1 190161163 to 190161438 275 CpG island CpG island 1203
Gm28172 1 190168670 to 190169633 963 + antisense lncRNA gene predicted gene 28172
Cpgi1204 1 190168806 to 190169569 763 CpG island CpG island 1204
Tssr15732 1 190169506 to 190169526 20 - TSS region transcription start site region 15732
Cpgi1205 1 190170021 to 190171056 1035 CpG island CpG island 1205
Tssr15733 1 190170178 to 190170212 34 - TSS region transcription start site region 15733
Tssr371 1 190170263 to 190170268 5 + TSS region transcription start site region 371
Tssr10702 1 190170281 to 190170301 20 + TSS region transcription start site region 10702
Prox1os 1 190170296 to 190217276 46980 + antisense lncRNA gene prospero homeobox 1, opposite strand
Tssr10703 1 190170322 to 190170331 9 + TSS region transcription start site region 10703
Tssr10704 1 190170341 to 190170358 17 + TSS region transcription start site region 10704
Tssr15734 1 190170671 to 190170744 73 - TSS region transcription start site region 15734
Tssr15735 1 190170821 to 190170832 11 - TSS region transcription start site region 15735
Tssr10705 1 190171085 to 190171087 2 + TSS region transcription start site region 10705
Tssr10706 1 190172047 to 190172054 7 + TSS region transcription start site region 10706
Cpgi1206 1 190172464 to 190173192 728 CpG island CpG island 1206
Cpgi1207 1 190174480 to 190175724 1244 CpG island CpG island 1207
D1Dcr45 1 190193799 to 190193898 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 45
D1Mit241 1 190350775 to 190350908 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 241
Gm39737 1 190391763 to 190398524 6761 - lncRNA gene predicted gene, 39737
Gm29678 1 190403645 to 190417145 13500 + lincRNA gene predicted gene, 29678
Gm30725 1 190419333 to 190444855 25522 - lincRNA gene predicted gene, 30725
Gm30815 1 190456180 to 190465694 9514 - lncRNA gene predicted gene, 30815
Tssr15736 1 190465686 to 190465699 13 - TSS region transcription start site region 15736
Gm23153 1 190482845 to 190483157 312 - unclassified non-coding RNA gene predicted gene, 23153
Gm47294 1 190482929 to 190483016 87 - miRNA gene predicted gene, 47294
Cpgi1208 1 190483146 to 190483384 238 CpG island CpG island 1208
Gm30932 1 190594268 to 190597119 2851 + lincRNA gene predicted gene, 30932
Tssr10707 1 190594300 to 190594314 14 + TSS region transcription start site region 10707
Tssr10708 1 190596535 to 190596554 19 + TSS region transcription start site region 10708
Tssr10709 1 190596561 to 190596584 23 + TSS region transcription start site region 10709
Tssr15737 1 190617472 to 190617473 1 - TSS region transcription start site region 15737
Cpgi1209 1 190682105 to 190682426 321 CpG island CpG island 1209
Cpgi1210 1 190690541 to 190690925 384 CpG island CpG island 1210
Gm38452 1 190700216 to 190729672 29456 - lncRNA gene predicted gene, 38452
Tssr10710 1 190714077 to 190714079 2 + TSS region transcription start site region 10710
Gm39738 1 190760656 to 190765573 4917 + lncRNA gene predicted gene, 39738
Tssr10711 1 190760957 to 190760966 9 + TSS region transcription start site region 10711
Rps6kc1 1 190772879 to 190912140 139261 - protein coding gene ribosomal protein S6 kinase polypeptide 1
D1Mit462 1 190801955 to 190802075 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 462
D1Mit462.2 1 190802070 to 190802270 200 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 462.2