Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:189685263-190655268

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cenpf 1 189640606 to 189688086 47480 - protein coding gene centromere protein F
Gm37239 1 189685328 to 189685468 140 + pseudogene predicted gene, 37239
Cpgi1198 1 189687675 to 189688502 827 CpG island CpG island 1198
Tssr15717 1 189688044 to 189688059 15 - TSS region transcription start site region 15717
Tssr15718 1 189688074 to 189688098 24 - TSS region transcription start site region 15718
Cpgi1199 1 189727390 to 189729045 1655 CpG island CpG island 1199
Tssr10688 1 189728248 to 189728259 11 + TSS region transcription start site region 10688
Tssr10689 1 189728264 to 189728326 62 + TSS region transcription start site region 10689
Ptpn14 1 189728268 to 189876695 148427 + protein coding gene protein tyrosine phosphatase, non-receptor type 14
Tssr10690 1 189728330 to 189728337 7 + TSS region transcription start site region 10690
Tssr15719 1 189729656 to 189729671 15 - TSS region transcription start site region 15719
Tssr15720 1 189755173 to 189755180 7 - TSS region transcription start site region 15720
Tssr10691 1 189775019 to 189775061 42 + TSS region transcription start site region 10691
Tssr10692 1 189782004 to 189782012 8 + TSS region transcription start site region 10692
Tssr10693 1 189785259 to 189785272 13 + TSS region transcription start site region 10693
Cpgi1200 1 189786670 to 189787028 358 CpG island CpG island 1200
Tssr10694 1 189798526 to 189798538 12 + TSS region transcription start site region 10694
Cpgi1201 1 189799057 to 189799240 183 CpG island CpG island 1201
V25Dq2 1 189800000 to 189800000 0 QTL vitamin D inactive form serum level QTL 2
Tssr10695 1 189827213 to 189827228 15 + TSS region transcription start site region 10695
Gm30280 1 189827230 to 189827491 261 + pseudogene predicted gene, 30280
Gm26574 1 189833141 to 189836620 3479 - antisense lncRNA gene predicted gene, 26574
Tssr10696 1 189844663 to 189844669 6 + TSS region transcription start site region 10696
Tssr10697 1 189860375 to 189860386 11 + TSS region transcription start site region 10697
Tssr15721 1 189867178 to 189867187 9 - TSS region transcription start site region 15721
Tssr10698 1 189879903 to 189879910 7 + TSS region transcription start site region 10698
Tssr10699 1 189879929 to 189879941 12 + TSS region transcription start site region 10699
Gm37422 1 189879935 to 189884652 4717 + antisense lncRNA gene predicted gene, 37422
Smyd2 1 189880492 to 189922363 41871 - protein coding gene SET and MYND domain containing 2
Tssr15722 1 189883977 to 189883999 22 - TSS region transcription start site region 15722
D1Mit409 1 189896713 to 189896809 96 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 409
D1Mit409.1 1 189896839 to 189896971 132 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 409.1
Tssr15723 1 189899631 to 189899653 22 - TSS region transcription start site region 15723
V25Dq1 1 189900000 to 189900000 0 QTL vitamin D inactive form serum level QTL 1
Tssr15724 1 189901705 to 189901709 4 - TSS region transcription start site region 15724
Gm38245 1 189913339 to 189915959 2620 - unclassified gene predicted gene, 38245
Cpgi1202 1 189921594 to 189922880 1286 CpG island CpG island 1202
Tssr15725 1 189922252 to 189922327 75 - TSS region transcription start site region 15725
Tssr15726 1 189922338 to 189922357 19 - TSS region transcription start site region 15726
Tssr15727 1 189922371 to 189922393 22 - TSS region transcription start site region 15727
Tssr15728 1 189922405 to 189922416 11 - TSS region transcription start site region 15728
D1Mit117 1 189923915 to 189924016 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 117
Gm39736 1 190039479 to 190045148 5669 - lncRNA gene predicted gene, 39736
Gm30446 1 190048724 to 190091303 42579 + lncRNA gene predicted gene, 30446
Tssr10700 1 190059323 to 190059325 2 + TSS region transcription start site region 10700
D1Mit56 1 190071515 to 190071637 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 56
Tssr370 1 190116784 to 190116787 3 + TSS region transcription start site region 370
Prox1 1 190118035 to 190170680 52645 - protein coding gene prospero homeobox 1
Tssr15729 1 190144207 to 190144210 3 - TSS region transcription start site region 15729
Tssr15730 1 190144495 to 190144520 25 - TSS region transcription start site region 15730
Tssr15731 1 190144551 to 190144561 10 - TSS region transcription start site region 15731
Tssr10701 1 190159792 to 190159817 25 + TSS region transcription start site region 10701
Cpgi1203 1 190161163 to 190161438 275 CpG island CpG island 1203
Gm28172 1 190168670 to 190169633 963 + antisense lncRNA gene predicted gene 28172
Cpgi1204 1 190168806 to 190169569 763 CpG island CpG island 1204
Tssr15732 1 190169506 to 190169526 20 - TSS region transcription start site region 15732
Cpgi1205 1 190170021 to 190171056 1035 CpG island CpG island 1205
Tssr15733 1 190170178 to 190170212 34 - TSS region transcription start site region 15733
Tssr371 1 190170263 to 190170268 5 + TSS region transcription start site region 371
Tssr10702 1 190170281 to 190170301 20 + TSS region transcription start site region 10702
Prox1os 1 190170296 to 190217276 46980 + antisense lncRNA gene prospero homeobox 1, opposite strand
Tssr10703 1 190170322 to 190170331 9 + TSS region transcription start site region 10703
Tssr10704 1 190170341 to 190170358 17 + TSS region transcription start site region 10704
Tssr15734 1 190170671 to 190170744 73 - TSS region transcription start site region 15734
Tssr15735 1 190170821 to 190170832 11 - TSS region transcription start site region 15735
Tssr10705 1 190171085 to 190171087 2 + TSS region transcription start site region 10705
Tssr10706 1 190172047 to 190172054 7 + TSS region transcription start site region 10706
Cpgi1206 1 190172464 to 190173192 728 CpG island CpG island 1206
Cpgi1207 1 190174480 to 190175724 1244 CpG island CpG island 1207
D1Dcr45 1 190193799 to 190193898 99 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 45
D1Mit241 1 190350775 to 190350908 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 241
Gm39737 1 190391763 to 190398524 6761 - lncRNA gene predicted gene, 39737
Gm29678 1 190403645 to 190417145 13500 + lincRNA gene predicted gene, 29678
Gm30725 1 190419333 to 190444855 25522 - lincRNA gene predicted gene, 30725
Gm30815 1 190456180 to 190465694 9514 - lncRNA gene predicted gene, 30815
Tssr15736 1 190465686 to 190465699 13 - TSS region transcription start site region 15736
Gm23153 1 190482845 to 190483157 312 - unclassified non-coding RNA gene predicted gene, 23153
Gm47294 1 190482929 to 190483016 87 - miRNA gene predicted gene, 47294
Cpgi1208 1 190483146 to 190483384 238 CpG island CpG island 1208
Gm30932 1 190594268 to 190597119 2851 + lincRNA gene predicted gene, 30932
Tssr10707 1 190594300 to 190594314 14 + TSS region transcription start site region 10707
Tssr10708 1 190596535 to 190596554 19 + TSS region transcription start site region 10708
Tssr10709 1 190596561 to 190596584 23 + TSS region transcription start site region 10709
Tssr15737 1 190617472 to 190617473 1 - TSS region transcription start site region 15737