Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:189403174-189834698

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr8 1 156774467 to 189571420 32796953 QTL leishmaniasis resistance 8
Bmd1 1 156774467 to 189571420 32796953 QTL bone mineral density 1
Mop3 1 167929168 to 189571420 21642252 QTL morphine preference 3
Scfr1 1 171804480 to 189571420 17766940 QTL stem cell frequency regulator 1
Bmd1c 1 186177593 to 189571420 3393827 QTL bone mineral density 1c
Sle1c 1 188862317 to 189571420 709103 QTL systematic lupus erythematosus susceptibility 1c
D1Mit153 1 189406727 to 189406961 234 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 153
Gm46177 1 189476447 to 189500338 23891 - lncRNA gene predicted gene, 46177
D1Mit408 1 189505352 to 189505473 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 408
Cpgi1196 1 189559811 to 189560255 444 CpG island CpG island 1196
D1Mit17 1 189571254 to 189571420 166 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 17
Cpfd2 1 189571254 to 189571420 166 QTL cerebellum pattern fissures, declival 2
Lmr8b 1 189571254 to 189571420 166 QTL leishmaniasis resistance 8b
Swrl5 1 189571254 to 189571420 166 QTL SWR lupus locus 5
Tgfbm2 1 189571254 to 189571420 166 QTL transforming growth factor beta, modifier 2
Hcs9 1 189571420 to 63815531 -125755889 QTL hepatocarcinogenesis susceptibility 9
Cia9 1 189571420 to 45744740 -143826680 QTL collagen induced arthritis QTL 9
Cpgi1197 1 189581901 to 189582453 552 CpG island CpG island 1197
Gm30088 1 189618174 to 189619698 1524 - lncRNA gene predicted gene, 30088
Gm38122 1 189639350 to 189640234 884 - unclassified gene predicted gene, 38122
Cenpf 1 189640606 to 189688086 47480 - protein coding gene centromere protein F
Tssr15716 1 189679578 to 189679588 10 - TSS region transcription start site region 15716
Gm37239 1 189685328 to 189685468 140 + pseudogene predicted gene, 37239
Cpgi1198 1 189687675 to 189688502 827 CpG island CpG island 1198
Tssr15717 1 189688044 to 189688059 15 - TSS region transcription start site region 15717
Tssr15718 1 189688074 to 189688098 24 - TSS region transcription start site region 15718
Cpgi1199 1 189727390 to 189729045 1655 CpG island CpG island 1199
Tssr10688 1 189728248 to 189728259 11 + TSS region transcription start site region 10688
Tssr10689 1 189728264 to 189728326 62 + TSS region transcription start site region 10689
Ptpn14 1 189728268 to 189876695 148427 + protein coding gene protein tyrosine phosphatase, non-receptor type 14
Tssr10690 1 189728330 to 189728337 7 + TSS region transcription start site region 10690
Tssr15719 1 189729656 to 189729671 15 - TSS region transcription start site region 15719
Tssr15720 1 189755173 to 189755180 7 - TSS region transcription start site region 15720
Tssr10691 1 189775019 to 189775061 42 + TSS region transcription start site region 10691
Tssr10692 1 189782004 to 189782012 8 + TSS region transcription start site region 10692
Tssr10693 1 189785259 to 189785272 13 + TSS region transcription start site region 10693
Cpgi1200 1 189786670 to 189787028 358 CpG island CpG island 1200
Tssr10694 1 189798526 to 189798538 12 + TSS region transcription start site region 10694
Cpgi1201 1 189799057 to 189799240 183 CpG island CpG island 1201
V25Dq2 1 189800000 to 189800000 0 QTL vitamin D inactive form serum level QTL 2
Tssr10695 1 189827213 to 189827228 15 + TSS region transcription start site region 10695
Gm30280 1 189827230 to 189827491 261 + pseudogene predicted gene, 30280
Gm26574 1 189833141 to 189836620 3479 - antisense lncRNA gene predicted gene, 26574