Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:188528145-189628769

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hbnr4 1 147249520 to 189251027 42001507 QTL Heligmosomoides bakeri nematode resistance 4
Lgaq3 1 150317922 to 188627115 38309193 QTL late growth adjusted QTL 3
Lgq4 1 150317922 to 188627115 38309193 QTL late growth QTL 4
Splq5 1 150317922 to 188627115 38309193 QTL spleen weight QTL 5
Lmr8 1 156774467 to 189571420 32796953 QTL leishmaniasis resistance 8
Bmd1 1 156774467 to 189571420 32796953 QTL bone mineral density 1
Mop3 1 167929168 to 189571420 21642252 QTL morphine preference 3
Scfr1 1 171804480 to 189571420 17766940 QTL stem cell frequency regulator 1
Bmd1c 1 186177593 to 189571420 3393827 QTL bone mineral density 1c
Ush2a 1 188262838 to 188965497 702659 + protein coding gene usherin
Gm39735 1 188541863 to 188550579 8716 - lncRNA gene predicted gene, 39735
Gm36456 1 188583002 to 188608529 25527 - lncRNA gene predicted gene, 36456
Gm25095 1 188622923 to 188623053 130 - snoRNA gene predicted gene, 25095
D1Mit223 1 188626970 to 188627115 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 223
Tssr369 1 188654651 to 188654681 30 + TSS region transcription start site region 369
Tssr10683 1 188654683 to 188654692 9 + TSS region transcription start site region 10683
Tssr10684 1 188680499 to 188680501 2 + TSS region transcription start site region 10684
Tssr10685 1 188680587 to 188680599 12 + TSS region transcription start site region 10685
Cpgi1192 1 188714184 to 188714350 166 CpG island CpG island 1192
Tssr10686 1 188727011 to 188727012 1 + TSS region transcription start site region 10686
Gm25269 1 188760476 to 188760579 103 + snRNA gene predicted gene, 25269
Sle1c 1 188862317 to 189571420 709103 QTL systematic lupus erythematosus susceptibility 1c
D1Mit274 1 188862317 to 188862462 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 274
n-TNgtt3 1 188941406 to 188941479 73 + tRNA gene nuclear encoded tRNA asparagine 3 (anticodon GTT)
D1Dcr20 1 188964007 to 188964105 98 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 20
Kctd3 1 188971095 to 189007841 36746 - protein coding gene potassium channel tetramerisation domain containing 3
Tssr15705 1 188978404 to 188978427 23 - TSS region transcription start site region 15705
Tssr15706 1 189000364 to 189000405 41 - TSS region transcription start site region 15706
Cpgi1193 1 189006965 to 189008015 1050 CpG island CpG island 1193
Tssr15707 1 189007829 to 189007852 23 - TSS region transcription start site region 15707
Tssr15708 1 189007856 to 189007869 13 - TSS region transcription start site region 15708
Tssr15709 1 189007894 to 189007910 16 - TSS region transcription start site region 15709
Gm36561 1 189034750 to 189038588 3838 + lncRNA gene predicted gene, 36561
Tssr10687 1 189034783 to 189034795 12 + TSS region transcription start site region 10687
Gm37178 1 189064895 to 189066433 1538 + unclassified gene predicted gene, 37178
Gm18698 1 189078145 to 189078769 624 - pseudogene predicted gene, 18698
Tssr15710 1 189128135 to 189128142 7 - TSS region transcription start site region 15710
Kcnk2 1 189207930 to 189402273 194343 - protein coding gene potassium channel, subfamily K, member 2
2900042K21Rik 1 189210361 to 189211013 652 - sense overlapping lncRNA gene RIKEN cDNA 2900042K21 gene
Cpgi1194 1 189249919 to 189250356 437 CpG island CpG island 1194
Tbbmd1 1 189250913 to 189251027 114 QTL total body bone mineral density 1
D1Mit362 1 189250913 to 189251027 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 362
Pdcd5-ps 1 189277443 to 189277823 380 - pseudogene programmed cell death 5, pseudogene
Tssr15711 1 189277762 to 189277801 39 - TSS region transcription start site region 15711
Cpgi1195 1 189342734 to 189344425 1691 CpG island CpG island 1195
Tssr15712 1 189343342 to 189343358 16 - TSS region transcription start site region 15712
A430027H14Rik 1 189343431 to 189344897 1466 + antisense lncRNA gene RIKEN cDNA A430027H14 gene
Tssr15713 1 189343707 to 189343749 42 - TSS region transcription start site region 15713
Gm24092 1 189393350 to 189393470 120 + miRNA gene predicted gene, 24092
Tssr15714 1 189402748 to 189402761 13 - TSS region transcription start site region 15714
Tssr15715 1 189402762 to 189402770 8 - TSS region transcription start site region 15715
D1Mit153 1 189406727 to 189406961 234 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 153
Gm46177 1 189476447 to 189500338 23891 - lncRNA gene predicted gene, 46177
D1Mit408 1 189505352 to 189505473 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 408
Cpgi1196 1 189559811 to 189560255 444 CpG island CpG island 1196
Cpfd2 1 189571254 to 189571420 166 QTL cerebellum pattern fissures, declival 2
D1Mit17 1 189571254 to 189571420 166 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 17
Tgfbm2 1 189571254 to 189571420 166 QTL transforming growth factor beta, modifier 2
Swrl5 1 189571254 to 189571420 166 QTL SWR lupus locus 5
Lmr8b 1 189571254 to 189571420 166 QTL leishmaniasis resistance 8b
Cia9 1 189571420 to 45744740 -143826680 QTL collagen induced arthritis QTL 9
Hcs9 1 189571420 to 63815531 -125755889 QTL hepatocarcinogenesis susceptibility 9
Cpgi1197 1 189581901 to 189582453 552 CpG island CpG island 1197
Gm30088 1 189618174 to 189619698 1524 - lncRNA gene predicted gene, 30088