Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:188239683-189069692

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lgaq3 1 150317922 to 188627115 38309193 QTL late growth adjusted QTL 3
Splq5 1 150317922 to 188627115 38309193 QTL spleen weight QTL 5
Lgq4 1 150317922 to 188627115 38309193 QTL late growth QTL 4
Gm38064 1 188246140 to 188257885 11745 + lincRNA gene predicted gene, 38064
Tssr10680 1 188261981 to 188261992 11 + TSS region transcription start site region 10680
Tssr10681 1 188262017 to 188262028 11 + TSS region transcription start site region 10681
Ush2a 1 188262838 to 188965497 702659 + protein coding gene usherin
Tssr368 1 188262899 to 188262903 4 + TSS region transcription start site region 368
Cpgi1191 1 188263217 to 188263466 249 CpG island CpG island 1191
Tssr15704 1 188320830 to 188320834 4 - TSS region transcription start site region 15704
Tssr10682 1 188383100 to 188383112 12 + TSS region transcription start site region 10682
D1Dcr19 1 188419328 to 188419425 97 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 19
Gm39735 1 188541863 to 188550579 8716 - lncRNA gene predicted gene, 39735
Gm36456 1 188583002 to 188608529 25527 - lncRNA gene predicted gene, 36456
Gm25095 1 188622923 to 188623053 130 - snoRNA gene predicted gene, 25095
D1Mit223 1 188626970 to 188627115 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 223
Tssr369 1 188654651 to 188654681 30 + TSS region transcription start site region 369
Tssr10683 1 188654683 to 188654692 9 + TSS region transcription start site region 10683
Tssr10684 1 188680499 to 188680501 2 + TSS region transcription start site region 10684
Tssr10685 1 188680587 to 188680599 12 + TSS region transcription start site region 10685
Cpgi1192 1 188714184 to 188714350 166 CpG island CpG island 1192
Tssr10686 1 188727011 to 188727012 1 + TSS region transcription start site region 10686
Gm25269 1 188760476 to 188760579 103 + snRNA gene predicted gene, 25269
D1Mit274 1 188862317 to 188862462 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 274
Sle1c 1 188862317 to 189571420 709103 QTL systematic lupus erythematosus susceptibility 1c
n-TNgtt3 1 188941406 to 188941479 73 + tRNA gene nuclear encoded tRNA asparagine 3 (anticodon GTT)
D1Dcr20 1 188964007 to 188964105 98 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 20
Kctd3 1 188971095 to 189007841 36746 - protein coding gene potassium channel tetramerisation domain containing 3
Tssr15705 1 188978404 to 188978427 23 - TSS region transcription start site region 15705
Tssr15706 1 189000364 to 189000405 41 - TSS region transcription start site region 15706
Cpgi1193 1 189006965 to 189008015 1050 CpG island CpG island 1193
Tssr15707 1 189007829 to 189007852 23 - TSS region transcription start site region 15707
Tssr15708 1 189007856 to 189007869 13 - TSS region transcription start site region 15708
Tssr15709 1 189007894 to 189007910 16 - TSS region transcription start site region 15709
Gm36561 1 189034750 to 189038588 3838 + lncRNA gene predicted gene, 36561
Tssr10687 1 189034783 to 189034795 12 + TSS region transcription start site region 10687
Gm37178 1 189064895 to 189066433 1538 + unclassified gene predicted gene, 37178