Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:188162838-189065497

39 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Splq5	1	150317922 to 188627115	38309193		QTL	spleen weight QTL 5
Lgaq3	1	150317922 to 188627115	38309193		QTL	late growth adjusted QTL 3
Lgq4	1	150317922 to 188627115	38309193		QTL	late growth QTL 4
Esrrg	1	187608791 to 188214884	606093	+	protein coding gene	estrogen-related receptor gamma
Gm38315	1	188160707 to 188163143	2436	+	unclassified gene	predicted gene, 38315
Gm38064	1	188246140 to 188257885	11745	+	lincRNA gene	predicted gene, 38064
Tssr10680	1	188261981 to 188261992	11	+	TSS region	transcription start site region 10680
Tssr10681	1	188262017 to 188262028	11	+	TSS region	transcription start site region 10681
Ush2a	1	188262838 to 188965497	702659	+	protein coding gene	usherin
Tssr368	1	188262899 to 188262903	4	+	TSS region	transcription start site region 368
Cpgi1191	1	188263217 to 188263466	249		CpG island	CpG island 1191
Tssr15704	1	188320830 to 188320834	4	-	TSS region	transcription start site region 15704
Tssr10682	1	188383100 to 188383112	12	+	TSS region	transcription start site region 10682
D1Dcr19	1	188419328 to 188419425	97		DNA segment	DNA Segment, Chr 1, Derry C. Roopenian 19
Gm39735	1	188541863 to 188550579	8716	-	lncRNA gene	predicted gene, 39735
Gm36456	1	188583002 to 188608529	25527	-	lncRNA gene	predicted gene, 36456
Gm25095	1	188622923 to 188623053	130	-	snoRNA gene	predicted gene, 25095
D1Mit223	1	188626970 to 188627115	145		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 223
Tssr369	1	188654651 to 188654681	30	+	TSS region	transcription start site region 369
Tssr10683	1	188654683 to 188654692	9	+	TSS region	transcription start site region 10683
Tssr10684	1	188680499 to 188680501	2	+	TSS region	transcription start site region 10684
Tssr10685	1	188680587 to 188680599	12	+	TSS region	transcription start site region 10685
Cpgi1192	1	188714184 to 188714350	166		CpG island	CpG island 1192
Tssr10686	1	188727011 to 188727012	1	+	TSS region	transcription start site region 10686
Gm25269	1	188760476 to 188760579	103	+	snRNA gene	predicted gene, 25269
D1Mit274	1	188862317 to 188862462	145		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 274
Sle1c	1	188862317 to 189571420	709103		QTL	systematic lupus erythematosus susceptibility 1c
n-TNgtt3	1	188941406 to 188941479	73	+	tRNA gene	nuclear encoded tRNA asparagine 3 (anticodon GTT)
D1Dcr20	1	188964007 to 188964105	98		DNA segment	DNA Segment, Chr 1, Derry C. Roopenian 20
Kctd3	1	188971095 to 189007841	36746	-	protein coding gene	potassium channel tetramerisation domain containing 3
Tssr15705	1	188978404 to 188978427	23	-	TSS region	transcription start site region 15705
Tssr15706	1	189000364 to 189000405	41	-	TSS region	transcription start site region 15706
Cpgi1193	1	189006965 to 189008015	1050		CpG island	CpG island 1193
Tssr15707	1	189007829 to 189007852	23	-	TSS region	transcription start site region 15707
Tssr15708	1	189007856 to 189007869	13	-	TSS region	transcription start site region 15708
Tssr15709	1	189007894 to 189007910	16	-	TSS region	transcription start site region 15709
Gm36561	1	189034750 to 189038588	3838	+	lncRNA gene	predicted gene, 36561
Tssr10687	1	189034783 to 189034795	12	+	TSS region	transcription start site region 10687
Gm37178	1	189064895 to 189066433	1538	+	unclassified gene	predicted gene, 37178