Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:187088174-192149698

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520 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nobq3 1 104005680 to 191493284 87487604 QTL New Zealand obese QTL 3
Hbnr4 1 147249520 to 189251027 42001507 QTL Heligmosomoides bakeri nematode resistance 4
Splq5 1 150317922 to 188627115 38309193 QTL spleen weight QTL 5
Lgaq3 1 150317922 to 188627115 38309193 QTL late growth adjusted QTL 3
Lgq4 1 150317922 to 188627115 38309193 QTL late growth QTL 4
Lmr8 1 156774467 to 189571420 32796953 QTL leishmaniasis resistance 8
Bmd1 1 156774467 to 189571420 32796953 QTL bone mineral density 1
Berr1 1 164315658 to 190802075 26486417 QTL berghei resistance locus 1
Liq1 1 167758517 to 191493284 23734767 QTL limb inflammation QTL 1
Mop3 1 167929168 to 189571420 21642252 QTL morphine preference 3
Scfr1 1 171804480 to 189571420 17766940 QTL stem cell frequency regulator 1
Bmd1c 1 186177593 to 189571420 3393827 QTL bone mineral density 1c
Spata17 1 187044648 to 187215465 170817 - protein coding gene spermatogenesis associated 17
Gm43496 1 187088160 to 187091160 3000 - unclassified gene predicted gene 43496
Gm15509 1 187120856 to 187122058 1202 - sense intronic lncRNA gene predicted gene 15509
Tssr10641 1 187125107 to 187125122 15 + TSS region transcription start site region 10641
Tssr10642 1 187125128 to 187125147 19 + TSS region transcription start site region 10642
1700007P06Rik 1 187125138 to 187127852 2714 + antisense lncRNA gene RIKEN cDNA 1700007P06 gene
Tssr15696 1 187143057 to 187143060 3 - TSS region transcription start site region 15696
Tssr15697 1 187143072 to 187143104 32 - TSS region transcription start site region 15697
Tssr15698 1 187199475 to 187199494 19 - TSS region transcription start site region 15698
Tssr15699 1 187199696 to 187199715 19 - TSS region transcription start site region 15699
Tssr15700 1 187215244 to 187215279 35 - TSS region transcription start site region 15700
Cpgi1182 1 187215370 to 187215946 576 CpG island CpG island 1182
Tssr15701 1 187215430 to 187215451 21 - TSS region transcription start site region 15701
Tssr15702 1 187215454 to 187215478 24 - TSS region transcription start site region 15702
Tssr15703 1 187215485 to 187215494 9 - TSS region transcription start site region 15703
Tssr10643 1 187215501 to 187215547 46 + TSS region transcription start site region 10643
Gpatch2 1 187215508 to 187351704 136196 + protein coding gene G patch domain containing 2
Tssr10644 1 187215548 to 187215559 11 + TSS region transcription start site region 10644
Tssr10645 1 187215714 to 187215728 14 + TSS region transcription start site region 10645
Tssr10646 1 187215737 to 187215748 11 + TSS region transcription start site region 10646
Gm37254 1 187236457 to 187240357 3900 + unclassified non-coding RNA gene predicted gene, 37254
D1Ertd75e 1 187260499 to 187260740 241 DNA segment DNA segment, Chr 1, ERATO Doi 75, expressed
Gm38155 1 187344970 to 187377469 32499 - antisense lncRNA gene predicted gene, 38155
Cpgi1183 1 187348413 to 187348660 247 CpG island CpG island 1183
Gm37896 1 187447877 to 187462664 14787 + lincRNA gene predicted gene, 37896
Gm36249 1 187486389 to 187492538 6149 - lncRNA gene predicted gene, 36249
Gm46176 1 187568366 to 187606051 37685 + lncRNA gene predicted gene, 46176
Cpgi1184 1 187604742 to 187604954 212 CpG island CpG island 1184
Cpgi1185 1 187605397 to 187605612 215 CpG island CpG island 1185
Cpgi1186 1 187607226 to 187608240 1014 CpG island CpG island 1186
Tssr10647 1 187607275 to 187607308 33 + TSS region transcription start site region 10647
Cpgi1187 1 187608668 to 187610193 1525 CpG island CpG island 1187
Tssr10648 1 187608755 to 187608764 9 + TSS region transcription start site region 10648
Esrrg 1 187608791 to 188214884 606093 + protein coding gene estrogen-related receptor gamma
Tssr10649 1 187608978 to 187608991 13 + TSS region transcription start site region 10649
Tssr10650 1 187609002 to 187609024 22 + TSS region transcription start site region 10650
Tssr10651 1 187609028 to 187609047 19 + TSS region transcription start site region 10651
Tssr10652 1 187609642 to 187609669 27 + TSS region transcription start site region 10652
Tssr10653 1 187616358 to 187616364 6 + TSS region transcription start site region 10653
Gm36388 1 187616852 to 187651824 34972 - antisense lncRNA gene predicted gene, 36388
Gm46175 1 187618775 to 187626938 8163 + protein coding gene predicted gene, 46175
Mors1 1 187647303 to 187647421 118 QTL modifier of obesity related sterility 1
D1Mit459 1 187647303 to 187647421 118 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 459
Tssr10654 1 187651511 to 187651534 23 + TSS region transcription start site region 10654
Cpgi1188 1 187651596 to 187652180 584 CpG island CpG island 1188
Tssr10655 1 187662119 to 187662131 12 + TSS region transcription start site region 10655
Tssr10656 1 187662333 to 187662371 38 + TSS region transcription start site region 10656
Tssr10657 1 187662376 to 187662384 8 + TSS region transcription start site region 10657
Tssr10658 1 187662474 to 187662485 11 + TSS region transcription start site region 10658
Tssr10659 1 187662487 to 187662508 21 + TSS region transcription start site region 10659
Gm37929 1 187662869 to 187663361 492 - unclassified gene predicted gene, 37929
Tssr10660 1 187692206 to 187692215 9 + TSS region transcription start site region 10660
Tssr10661 1 187742343 to 187742345 2 + TSS region transcription start site region 10661
Tssr10662 1 187742532 to 187742544 12 + TSS region transcription start site region 10662
Tssr10663 1 187742592 to 187742616 24 + TSS region transcription start site region 10663
Tssr10664 1 187796264 to 187796268 4 + TSS region transcription start site region 10664
Tssr10665 1 187803503 to 187803528 25 + TSS region transcription start site region 10665
Tssr10666 1 187804968 to 187804988 20 + TSS region transcription start site region 10666
Tssr10667 1 187810393 to 187810396 3 + TSS region transcription start site region 10667
Tssr10668 1 187843308 to 187843321 13 + TSS region transcription start site region 10668
Tssr10669 1 187890669 to 187890672 3 + TSS region transcription start site region 10669
Tssr10670 1 187898646 to 187898652 6 + TSS region transcription start site region 10670
Renaq1 1 187901038 to 187931168 30130 QTL renal aging QTL 1
Tssr10671 1 187919288 to 187919306 18 + TSS region transcription start site region 10671
Tssr367 1 187942907 to 187942910 3 + TSS region transcription start site region 367
Tssr10672 1 187943320 to 187943331 11 + TSS region transcription start site region 10672
Tssr10673 1 187943334 to 187943345 11 + TSS region transcription start site region 10673
Tssr10674 1 187956816 to 187956821 5 + TSS region transcription start site region 10674
Tssr10675 1 187981766 to 187981770 4 + TSS region transcription start site region 10675
Cpgi1189 1 187997611 to 187998263 652 CpG island CpG island 1189
Tssr10676 1 187997821 to 187997834 13 + TSS region transcription start site region 10676
Tssr10677 1 187997835 to 187997882 47 + TSS region transcription start site region 10677
9330162B11Rik 1 188006576 to 188008990 2414 - antisense lncRNA gene RIKEN cDNA 9330162B11 gene
Tssr10678 1 188055006 to 188055010 4 + TSS region transcription start site region 10678
Cpgi1190 1 188077784 to 188077995 211 CpG island CpG island 1190
Tssr10679 1 188154333 to 188154342 9 + TSS region transcription start site region 10679
Gm38315 1 188160707 to 188163143 2436 + unclassified gene predicted gene, 38315
Gm38064 1 188246140 to 188257885 11745 + lincRNA gene predicted gene, 38064
Tssr10680 1 188261981 to 188261992 11 + TSS region transcription start site region 10680
Tssr10681 1 188262017 to 188262028 11 + TSS region transcription start site region 10681
Ush2a 1 188262838 to 188965497 702659 + protein coding gene usherin
Tssr368 1 188262899 to 188262903 4 + TSS region transcription start site region 368
Cpgi1191 1 188263217 to 188263466 249 CpG island CpG island 1191
Tssr15704 1 188320830 to 188320834 4 - TSS region transcription start site region 15704
Tssr10682 1 188383100 to 188383112 12 + TSS region transcription start site region 10682
D1Dcr19 1 188419328 to 188419425 97 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 19
Gm39735 1 188541863 to 188550579 8716 - lncRNA gene predicted gene, 39735
Gm36456 1 188583002 to 188608529 25527 - lncRNA gene predicted gene, 36456
Gm25095 1 188622923 to 188623053 130 - snoRNA gene predicted gene, 25095
D1Mit223 1 188626970 to 188627115 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 223
Tssr369 1 188654651 to 188654681 30 + TSS region transcription start site region 369
Tssr10683 1 188654683 to 188654692 9 + TSS region transcription start site region 10683
Tssr10684 1 188680499 to 188680501 2 + TSS region transcription start site region 10684
Tssr10685 1 188680587 to 188680599 12 + TSS region transcription start site region 10685
Cpgi1192 1 188714184 to 188714350 166 CpG island CpG island 1192
Tssr10686 1 188727011 to 188727012 1 + TSS region transcription start site region 10686
Gm25269 1 188760476 to 188760579 103 + snRNA gene predicted gene, 25269
D1Mit274 1 188862317 to 188862462 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 274
Sle1c 1 188862317 to 189571420 709103 QTL systematic lupus erythematosus susceptibility 1c
n-TNgtt3 1 188941406 to 188941479 73 + tRNA gene nuclear encoded tRNA asparagine 3 (anticodon GTT)
D1Dcr20 1 188964007 to 188964105 98 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 20
Kctd3 1 188971095 to 189007841 36746 - protein coding gene potassium channel tetramerisation domain containing 3
Tssr15705 1 188978404 to 188978427 23 - TSS region transcription start site region 15705
Tssr15706 1 189000364 to 189000405 41 - TSS region transcription start site region 15706
Cpgi1193 1 189006965 to 189008015 1050 CpG island CpG island 1193
Tssr15707 1 189007829 to 189007852 23 - TSS region transcription start site region 15707
Tssr15708 1 189007856 to 189007869 13 - TSS region transcription start site region 15708
Tssr15709 1 189007894 to 189007910 16 - TSS region transcription start site region 15709
Gm36561 1 189034750 to 189038588 3838 + lncRNA gene predicted gene, 36561
Tssr10687 1 189034783 to 189034795 12 + TSS region transcription start site region 10687
Gm37178 1 189064895 to 189066433 1538 + unclassified gene predicted gene, 37178
Gm18698 1 189078145 to 189078769 624 - pseudogene predicted gene, 18698
Tssr15710 1 189128135 to 189128142 7 - TSS region transcription start site region 15710
Kcnk2 1 189207930 to 189402273 194343 - protein coding gene potassium channel, subfamily K, member 2
2900042K21Rik 1 189210361 to 189211013 652 - sense overlapping lncRNA gene RIKEN cDNA 2900042K21 gene
Cpgi1194 1 189249919 to 189250356 437 CpG island CpG island 1194
Tbbmd1 1 189250913 to 189251027 114 QTL total body bone mineral density 1
D1Mit362 1 189250913 to 189251027 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 362
Pdcd5-ps 1 189277443 to 189277823 380 - pseudogene programmed cell death 5, pseudogene
Tssr15711 1 189277762 to 189277801 39 - TSS region transcription start site region 15711
Cpgi1195 1 189342734 to 189344425 1691 CpG island CpG island 1195
Tssr15712 1 189343342 to 189343358 16 - TSS region transcription start site region 15712
A430027H14Rik 1 189343431 to 189344897 1466 + antisense lncRNA gene RIKEN cDNA A430027H14 gene
Tssr15713 1 189343707 to 189343749 42 - TSS region transcription start site region 15713
Gm24092 1 189393350 to 189393470 120 + miRNA gene predicted gene, 24092
Tssr15714 1 189402748 to 189402761 13 - TSS region transcription start site region 15714
Tssr15715 1 189402762 to 189402770 8 - TSS region transcription start site region 15715
D1Mit153 1 189406727 to 189406961 234 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 153
Gm46177 1 189476447 to 189500338 23891 - lncRNA gene predicted gene, 46177
D1Mit408 1 189505352 to 189505473 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 408
Cpgi1196 1 189559811 to 189560255 444 CpG island CpG island 1196
Swrl5 1 189571254 to 189571420 166 QTL SWR lupus locus 5
Cpfd2 1 189571254 to 189571420 166 QTL cerebellum pattern fissures, declival 2
D1Mit17 1 189571254 to 189571420 166 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 17
Tgfbm2 1 189571254 to 189571420 166 QTL transforming growth factor beta, modifier 2
Lmr8b 1 189571254 to 189571420 166 QTL leishmaniasis resistance 8b
Hcs9 1 189571420 to 63815531 -125755889 QTL hepatocarcinogenesis susceptibility 9
Cia9 1 189571420 to 45744740 -143826680 QTL collagen induced arthritis QTL 9
Cpgi1197 1 189581901 to 189582453 552 CpG island CpG island 1197
Gm30088 1 189618174 to 189619698 1524 - lncRNA gene predicted gene, 30088
Gm38122 1 189639350 to 189640234 884 - unclassified gene predicted gene, 38122
Cenpf 1 189640606 to 189688086 47480 - protein coding gene centromere protein F
Tssr15716 1 189679578 to 189679588 10 - TSS region transcription start site region 15716
Gm37239 1 189685328 to 189685468 140 + pseudogene predicted gene, 37239
Cpgi1198 1 189687675 to 189688502 827 CpG island CpG island 1198
Tssr15717 1 189688044 to 189688059 15 - TSS region transcription start site region 15717
Tssr15718 1 189688074 to 189688098 24 - TSS region transcription start site region 15718
Cpgi1199 1 189727390 to 189729045 1655 CpG island CpG island 1199
Tssr10688 1 189728248 to 189728259 11 + TSS region transcription start site region 10688
Tssr10689 1 189728264 to 189728326 62 + TSS region transcription start site region 10689
Ptpn14 1 189728268 to 189876695 148427 + protein coding gene protein tyrosine phosphatase, non-receptor type 14
Tssr10690 1 189728330 to 189728337 7 + TSS region transcription start site region 10690
Tssr15719 1 189729656 to 189729671 15 - TSS region transcription start site region 15719
Tssr15720 1 189755173 to 189755180 7 - TSS region transcription start site region 15720
Tssr10691 1 189775019 to 189775061 42 + TSS region transcription start site region 10691
Tssr10692 1 189782004 to 189782012 8 + TSS region transcription start site region 10692
Tssr10693 1 189785259 to 189785272 13 + TSS region transcription start site region 10693
Cpgi1200 1 189786670 to 189787028 358 CpG island CpG island 1200
Tssr10694 1 189798526 to 189798538 12 + TSS region transcription start site region 10694
Cpgi1201 1 189799057 to 189799240 183 CpG island CpG island 1201
V25Dq2 1 189800000 to 189800000 0 QTL vitamin D inactive form serum level QTL 2
Tssr10695 1 189827213 to 189827228 15 + TSS region transcription start site region 10695
Gm30280 1 189827230 to 189827491 261 + pseudogene predicted gene, 30280
Gm26574 1 189833141 to 189836620 3479 - antisense lncRNA gene predicted gene, 26574
Tssr10696 1 189844663 to 189844669 6 + TSS region transcription start site region 10696
Tssr10697 1 189860375 to 189860386 11 + TSS region transcription start site region 10697
Tssr15721 1 189867178 to 189867187 9 - TSS region transcription start site region 15721
Tssr10698 1 189879903 to 189879910 7 + TSS region transcription start site region 10698
Tssr10699 1 189879929 to 189879941 12 + TSS region transcription start site region 10699
Gm37422 1 189879935 to 189884652 4717 + antisense lncRNA gene predicted gene, 37422
Smyd2 1 189880492 to 189922363 41871 - protein coding gene SET and MYND domain containing 2
Tssr15722 1 189883977 to 189883999 22 - TSS region transcription start site region 15722
D1Mit409 1 189896713 to 189896809 96 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 409
D1Mit409.1 1 189896839 to 189896971 132 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 409.1
Tssr15723 1 189899631 to 189899653 22 - TSS region transcription start site region 15723
V25Dq1 1 189900000 to 189900000 0 QTL vitamin D inactive form serum level QTL 1
Tssr15724 1 189901705 to 189901709 4 - TSS region transcription start site region 15724
Gm38245 1 189913339 to 189915959 2620 - unclassified gene predicted gene, 38245
Cpgi1202 1 189921594 to 189922880 1286 CpG island CpG island 1202
Tssr15725 1 189922252 to 189922327 75 - TSS region transcription start site region 15725
Tssr15726 1 189922338 to 189922357 19 - TSS region transcription start site region 15726
Tssr15727 1 189922371 to 189922393 22 - TSS region transcription start site region 15727
Tssr15728 1 189922405 to 189922416 11 - TSS region transcription start site region 15728
D1Mit117 1 189923915 to 189924016 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 117
Gm39736 1 190039479 to 190045148 5669 - lncRNA gene predicted gene, 39736
Gm30446 1 190048724 to 190091303 42579 + lncRNA gene predicted gene, 30446
Tssr10700 1 190059323 to 190059325 2 + TSS region transcription start site region 10700
D1Mit56 1 190071515 to 190071637 122 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 56