Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:186157593-189591420

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223 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hbnr4 1 147249520 to 189251027 42001507 QTL Heligmosomoides bakeri nematode resistance 4
Lgq4 1 150317922 to 188627115 38309193 QTL late growth QTL 4
Lgaq3 1 150317922 to 188627115 38309193 QTL late growth adjusted QTL 3
Splq5 1 150317922 to 188627115 38309193 QTL spleen weight QTL 5
Nba10 1 152919071 to 186706423 33787352 QTL New Zealand Black autoimmunity 10
Shali5 1 155706491 to 186261999 30555508 QTL survival time to hyperoxic acute lung injury 5
Bmd1 1 156774467 to 189571420 32796953 QTL bone mineral density 1
Lmr8 1 156774467 to 189571420 32796953 QTL leishmaniasis resistance 8
Emo1 1 163149528 to 186261999 23112471 QTL emotionality 1
Mop3 1 167929168 to 189571420 21642252 QTL morphine preference 3
Scfr1 1 171804480 to 189571420 17766940 QTL stem cell frequency regulator 1
Gm37134 1 186177338 to 186223789 46451 + lincRNA gene predicted gene, 37134
Bmd1c 1 186177593 to 189571420 3393827 QTL bone mineral density 1c
D1Mit407 1 186177593 to 186177711 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 407
Gm37272 1 186182257 to 186182744 487 + unclassified gene predicted gene, 37272
D1Mit361 1 186261829 to 186261999 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 361
D1Mit361.3 1 186262012 to 186262127 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 361.3
Tssr15676 1 186309313 to 186309314 1 - TSS region transcription start site region 15676
Gm37491 1 186347315 to 186348425 1110 + unclassified gene predicted gene, 37491
Gm35341 1 186407824 to 186420512 12688 + lncRNA gene predicted gene, 35341
Gm35426 1 186463840 to 186486460 22620 - lncRNA gene predicted gene, 35426
A730004F24Rik 1 186511838 to 186558681 46843 - lincRNA gene RIKEN cDNA A730004F24 gene
Tssr10624 1 186512106 to 186512108 2 + TSS region transcription start site region 10624
Tssr15677 1 186558504 to 186558521 17 - TSS region transcription start site region 15677
Gm35546 1 186587070 to 186614781 27711 + lncRNA gene predicted gene, 35546
Tssr10625 1 186587295 to 186587310 15 + TSS region transcription start site region 10625
Tssr10626 1 186587315 to 186587350 35 + TSS region transcription start site region 10626
Tssr10627 1 186587362 to 186587372 10 + TSS region transcription start site region 10627
Tssr10628 1 186587404 to 186587413 9 + TSS region transcription start site region 10628
Tssr10629 1 186587479 to 186587492 13 + TSS region transcription start site region 10629
Tssr10630 1 186587503 to 186587515 12 + TSS region transcription start site region 10630
Tgfb2 1 186622792 to 186705989 83197 - protein coding gene transforming growth factor, beta 2
Tssr15678 1 186623746 to 186623756 10 - TSS region transcription start site region 15678
Tssr15679 1 186624297 to 186624303 6 - TSS region transcription start site region 15679
Tssr15680 1 186625210 to 186625216 6 - TSS region transcription start site region 15680
Tssr15681 1 186634021 to 186634034 13 - TSS region transcription start site region 15681
Gm26169 1 186676742 to 186676876 134 + snoRNA gene predicted gene, 26169
Tssr15682 1 186689367 to 186689410 43 - TSS region transcription start site region 15682
Gm35655 1 186701980 to 186703803 1823 + lncRNA gene predicted gene, 35655
Cpgi1175 1 186704229 to 186704747 518 CpG island CpG island 1175
Tssr15683 1 186704511 to 186704583 72 - TSS region transcription start site region 15683
Tssr15684 1 186704956 to 186704964 8 - TSS region transcription start site region 15684
Tssr15685 1 186704993 to 186705023 30 - TSS region transcription start site region 15685
Tssr10631 1 186705013 to 186705022 9 + TSS region transcription start site region 10631
Cpgi1176 1 186705072 to 186706158 1086 CpG island CpG island 1176
Tssr15686 1 186705236 to 186705245 9 - TSS region transcription start site region 15686
Tssr15687 1 186705264 to 186705295 31 - TSS region transcription start site region 15687
Tssr15688 1 186705316 to 186705325 9 - TSS region transcription start site region 15688
Tssr15689 1 186705326 to 186705356 30 - TSS region transcription start site region 15689
Tssr15690 1 186705563 to 186705598 35 - TSS region transcription start site region 15690
Gm29491 1 186705695 to 186707033 1338 + antisense lncRNA gene predicted gene 29491
Tssr10632 1 186705894 to 186705919 25 + TSS region transcription start site region 10632
Tssr15691 1 186705980 to 186705999 19 - TSS region transcription start site region 15691
Tssr15692 1 186706048 to 186706060 12 - TSS region transcription start site region 15692
Tssr15693 1 186706061 to 186706097 36 - TSS region transcription start site region 15693
D1Mit461 1 186706303 to 186706423 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 461
Tssr10633 1 186709469 to 186709471 2 + TSS region transcription start site region 10633
Gm37849 1 186711218 to 186713098 1880 - unclassified gene predicted gene, 37849
Rrp15 1 186721086 to 186749358 28272 - protein coding gene ribosomal RNA processing 15 homolog (S. cerevisiae)
Cpgi1177 1 186748998 to 186749609 611 CpG island CpG island 1177
Tssr15694 1 186749284 to 186749293 9 - TSS region transcription start site region 15694
Tssr15695 1 186749304 to 186749340 36 - TSS region transcription start site region 15695
Tssr10634 1 186749368 to 186749415 47 + TSS region transcription start site region 10634
A430105J06Rik 1 186749396 to 186752921 3525 + lincRNA gene RIKEN cDNA A430105J06 gene
Cpgi1178 1 186833359 to 186833625 266 CpG island CpG island 1178
Cpgi1179 1 186833918 to 186834812 894 CpG island CpG island 1179
Cpgi1180 1 186858479 to 186858737 258 CpG island CpG island 1180
Gm39732 1 186917168 to 186942292 25124 - lncRNA gene predicted gene, 39732
Tssr10635 1 186926908 to 186926934 26 + TSS region transcription start site region 10635
1700023G09Rik 1 186926933 to 186930112 3179 + lincRNA gene RIKEN cDNA 1700023G09 gene
Gm39731 1 186941358 to 186945976 4618 + lncRNA gene predicted gene, 39731
Tssr10636 1 186960433 to 186960436 3 + TSS region transcription start site region 10636
Gm3809 1 186960508 to 186961513 1005 + pseudogene predicted gene 3809
Gm37912 1 186964528 to 186967603 3075 - antisense lncRNA gene predicted gene, 37912
Tssr10637 1 186967075 to 186967085 10 + TSS region transcription start site region 10637
Tssr10638 1 186967087 to 186967108 21 + TSS region transcription start site region 10638
Cpgi1181 1 186967290 to 186968435 1145 CpG island CpG island 1181
D1Pas1 1 186967416 to 186970627 3211 + protein coding gene DNA segment, Chr 1, Pasteur Institute 1
Tssr10639 1 186967639 to 186967646 7 + TSS region transcription start site region 10639
Tssr10640 1 186967667 to 186967690 23 + TSS region transcription start site region 10640
Gm19058 1 187006010 to 187006577 567 - pseudogene predicted gene, 19058
Spata17 1 187044648 to 187215465 170817 - protein coding gene spermatogenesis associated 17
Gm15508 1 187073011 to 187073335 324 - pseudogene predicted gene 15508
Tssr366 1 187078559 to 187078571 12 + TSS region transcription start site region 366
Gm43497 1 187081569 to 187083884 2315 - unclassified gene predicted gene 43497
Gm43496 1 187088160 to 187091160 3000 - unclassified gene predicted gene 43496
Gm15509 1 187120856 to 187122058 1202 - sense intronic lncRNA gene predicted gene 15509
Tssr10641 1 187125107 to 187125122 15 + TSS region transcription start site region 10641
Tssr10642 1 187125128 to 187125147 19 + TSS region transcription start site region 10642
1700007P06Rik 1 187125138 to 187127852 2714 + antisense lncRNA gene RIKEN cDNA 1700007P06 gene
Tssr15696 1 187143057 to 187143060 3 - TSS region transcription start site region 15696
Tssr15697 1 187143072 to 187143104 32 - TSS region transcription start site region 15697
Tssr15698 1 187199475 to 187199494 19 - TSS region transcription start site region 15698
Tssr15699 1 187199696 to 187199715 19 - TSS region transcription start site region 15699
Tssr15700 1 187215244 to 187215279 35 - TSS region transcription start site region 15700
Cpgi1182 1 187215370 to 187215946 576 CpG island CpG island 1182
Tssr15701 1 187215430 to 187215451 21 - TSS region transcription start site region 15701
Tssr15702 1 187215454 to 187215478 24 - TSS region transcription start site region 15702
Tssr15703 1 187215485 to 187215494 9 - TSS region transcription start site region 15703
Tssr10643 1 187215501 to 187215547 46 + TSS region transcription start site region 10643
Gpatch2 1 187215508 to 187351704 136196 + protein coding gene G patch domain containing 2
Tssr10644 1 187215548 to 187215559 11 + TSS region transcription start site region 10644
Tssr10645 1 187215714 to 187215728 14 + TSS region transcription start site region 10645
Tssr10646 1 187215737 to 187215748 11 + TSS region transcription start site region 10646
Gm37254 1 187236457 to 187240357 3900 + unclassified non-coding RNA gene predicted gene, 37254
D1Ertd75e 1 187260499 to 187260740 241 DNA segment DNA segment, Chr 1, ERATO Doi 75, expressed
Gm38155 1 187344970 to 187377469 32499 - antisense lncRNA gene predicted gene, 38155
Cpgi1183 1 187348413 to 187348660 247 CpG island CpG island 1183
Gm37896 1 187447877 to 187462664 14787 + lincRNA gene predicted gene, 37896
Gm36249 1 187486389 to 187492538 6149 - lncRNA gene predicted gene, 36249
Gm46176 1 187568366 to 187606051 37685 + lncRNA gene predicted gene, 46176
Cpgi1184 1 187604742 to 187604954 212 CpG island CpG island 1184
Cpgi1185 1 187605397 to 187605612 215 CpG island CpG island 1185
Cpgi1186 1 187607226 to 187608240 1014 CpG island CpG island 1186
Tssr10647 1 187607275 to 187607308 33 + TSS region transcription start site region 10647
Cpgi1187 1 187608668 to 187610193 1525 CpG island CpG island 1187
Tssr10648 1 187608755 to 187608764 9 + TSS region transcription start site region 10648
Esrrg 1 187608791 to 188214884 606093 + protein coding gene estrogen-related receptor gamma
Tssr10649 1 187608978 to 187608991 13 + TSS region transcription start site region 10649
Tssr10650 1 187609002 to 187609024 22 + TSS region transcription start site region 10650
Tssr10651 1 187609028 to 187609047 19 + TSS region transcription start site region 10651
Tssr10652 1 187609642 to 187609669 27 + TSS region transcription start site region 10652
Tssr10653 1 187616358 to 187616364 6 + TSS region transcription start site region 10653
Gm36388 1 187616852 to 187651824 34972 - antisense lncRNA gene predicted gene, 36388
Gm46175 1 187618775 to 187626938 8163 + protein coding gene predicted gene, 46175
Mors1 1 187647303 to 187647421 118 QTL modifier of obesity related sterility 1
D1Mit459 1 187647303 to 187647421 118 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 459
Tssr10654 1 187651511 to 187651534 23 + TSS region transcription start site region 10654
Cpgi1188 1 187651596 to 187652180 584 CpG island CpG island 1188
Tssr10655 1 187662119 to 187662131 12 + TSS region transcription start site region 10655
Tssr10656 1 187662333 to 187662371 38 + TSS region transcription start site region 10656
Tssr10657 1 187662376 to 187662384 8 + TSS region transcription start site region 10657
Tssr10658 1 187662474 to 187662485 11 + TSS region transcription start site region 10658
Tssr10659 1 187662487 to 187662508 21 + TSS region transcription start site region 10659
Gm37929 1 187662869 to 187663361 492 - unclassified gene predicted gene, 37929
Tssr10660 1 187692206 to 187692215 9 + TSS region transcription start site region 10660
Tssr10661 1 187742343 to 187742345 2 + TSS region transcription start site region 10661
Tssr10662 1 187742532 to 187742544 12 + TSS region transcription start site region 10662
Tssr10663 1 187742592 to 187742616 24 + TSS region transcription start site region 10663
Tssr10664 1 187796264 to 187796268 4 + TSS region transcription start site region 10664
Tssr10665 1 187803503 to 187803528 25 + TSS region transcription start site region 10665
Tssr10666 1 187804968 to 187804988 20 + TSS region transcription start site region 10666
Tssr10667 1 187810393 to 187810396 3 + TSS region transcription start site region 10667
Tssr10668 1 187843308 to 187843321 13 + TSS region transcription start site region 10668
Tssr10669 1 187890669 to 187890672 3 + TSS region transcription start site region 10669
Tssr10670 1 187898646 to 187898652 6 + TSS region transcription start site region 10670
Renaq1 1 187901038 to 187931168 30130 QTL renal aging QTL 1
Tssr10671 1 187919288 to 187919306 18 + TSS region transcription start site region 10671
Tssr367 1 187942907 to 187942910 3 + TSS region transcription start site region 367
Tssr10672 1 187943320 to 187943331 11 + TSS region transcription start site region 10672
Tssr10673 1 187943334 to 187943345 11 + TSS region transcription start site region 10673
Tssr10674 1 187956816 to 187956821 5 + TSS region transcription start site region 10674
Tssr10675 1 187981766 to 187981770 4 + TSS region transcription start site region 10675
Cpgi1189 1 187997611 to 187998263 652 CpG island CpG island 1189
Tssr10676 1 187997821 to 187997834 13 + TSS region transcription start site region 10676
Tssr10677 1 187997835 to 187997882 47 + TSS region transcription start site region 10677
9330162B11Rik 1 188006576 to 188008990 2414 - antisense lncRNA gene RIKEN cDNA 9330162B11 gene
Tssr10678 1 188055006 to 188055010 4 + TSS region transcription start site region 10678
Cpgi1190 1 188077784 to 188077995 211 CpG island CpG island 1190
Tssr10679 1 188154333 to 188154342 9 + TSS region transcription start site region 10679
Gm38315 1 188160707 to 188163143 2436 + unclassified gene predicted gene, 38315
Gm38064 1 188246140 to 188257885 11745 + lincRNA gene predicted gene, 38064
Tssr10680 1 188261981 to 188261992 11 + TSS region transcription start site region 10680
Tssr10681 1 188262017 to 188262028 11 + TSS region transcription start site region 10681
Ush2a 1 188262838 to 188965497 702659 + protein coding gene usherin
Tssr368 1 188262899 to 188262903 4 + TSS region transcription start site region 368
Cpgi1191 1 188263217 to 188263466 249 CpG island CpG island 1191
Tssr15704 1 188320830 to 188320834 4 - TSS region transcription start site region 15704
Tssr10682 1 188383100 to 188383112 12 + TSS region transcription start site region 10682
D1Dcr19 1 188419328 to 188419425 97 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 19
Gm39735 1 188541863 to 188550579 8716 - lncRNA gene predicted gene, 39735
Gm36456 1 188583002 to 188608529 25527 - lncRNA gene predicted gene, 36456
Gm25095 1 188622923 to 188623053 130 - snoRNA gene predicted gene, 25095
D1Mit223 1 188626970 to 188627115 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 223
Tssr369 1 188654651 to 188654681 30 + TSS region transcription start site region 369
Tssr10683 1 188654683 to 188654692 9 + TSS region transcription start site region 10683
Tssr10684 1 188680499 to 188680501 2 + TSS region transcription start site region 10684
Tssr10685 1 188680587 to 188680599 12 + TSS region transcription start site region 10685
Cpgi1192 1 188714184 to 188714350 166 CpG island CpG island 1192
Tssr10686 1 188727011 to 188727012 1 + TSS region transcription start site region 10686
Gm25269 1 188760476 to 188760579 103 + snRNA gene predicted gene, 25269
D1Mit274 1 188862317 to 188862462 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 274
Sle1c 1 188862317 to 189571420 709103 QTL systematic lupus erythematosus susceptibility 1c
n-TNgtt3 1 188941406 to 188941479 73 + tRNA gene nuclear encoded tRNA asparagine 3 (anticodon GTT)
D1Dcr20 1 188964007 to 188964105 98 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 20
Kctd3 1 188971095 to 189007841 36746 - protein coding gene potassium channel tetramerisation domain containing 3
Tssr15705 1 188978404 to 188978427 23 - TSS region transcription start site region 15705
Tssr15706 1 189000364 to 189000405 41 - TSS region transcription start site region 15706
Cpgi1193 1 189006965 to 189008015 1050 CpG island CpG island 1193
Tssr15707 1 189007829 to 189007852 23 - TSS region transcription start site region 15707
Tssr15708 1 189007856 to 189007869 13 - TSS region transcription start site region 15708
Tssr15709 1 189007894 to 189007910 16 - TSS region transcription start site region 15709
Gm36561 1 189034750 to 189038588 3838 + lncRNA gene predicted gene, 36561
Tssr10687 1 189034783 to 189034795 12 + TSS region transcription start site region 10687
Gm37178 1 189064895 to 189066433 1538 + unclassified gene predicted gene, 37178
Gm18698 1 189078145 to 189078769 624 - pseudogene predicted gene, 18698
Tssr15710 1 189128135 to 189128142 7 - TSS region transcription start site region 15710
Kcnk2 1 189207930 to 189402273 194343 - protein coding gene potassium channel, subfamily K, member 2
2900042K21Rik 1 189210361 to 189211013 652 - sense overlapping lncRNA gene RIKEN cDNA 2900042K21 gene
Cpgi1194 1 189249919 to 189250356 437 CpG island CpG island 1194