Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:185268084-186488885

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shali5 1 155706491 to 186261999 30555508 QTL survival time to hyperoxic acute lung injury 5
Emo1 1 163149528 to 186261999 23112471 QTL emotionality 1
Rab3gap2 1 185204117 to 185286759 82642 + protein coding gene RAB3 GTPase activating protein subunit 2
Tssr10598 1 185270986 to 185271006 20 + TSS region transcription start site region 10598
Tssr10599 1 185283057 to 185283070 13 + TSS region transcription start site region 10599
Tssr363 1 185283125 to 185283152 27 + TSS region transcription start site region 363
Tssr364 1 185283291 to 185283293 2 + TSS region transcription start site region 364
Iars2 1 185286662 to 185329416 42754 - protein coding gene isoleucine-tRNA synthetase 2, mitochondrial
Tssr10600 1 185312185 to 185312200 15 + TSS region transcription start site region 10600
2010103J01Rik 1 185312187 to 185313803 1616 + antisense lncRNA gene RIKEN cDNA 2010103J01 gene
Mirc38 1 185313319 to 185313692 373 complex/cluster/region microRNA cluster 38, including Mir194-1 through Mir215
Mir194-1 1 185313319 to 185313385 66 + miRNA gene microRNA 194-1
Mir215 1 185313581 to 185313692 111 + miRNA gene microRNA 215
Tssr10601 1 185313670 to 185313674 4 + TSS region transcription start site region 10601
Cpgi1170 1 185328598 to 185329617 1019 CpG island CpG island 1170
Tssr15670 1 185329331 to 185329401 70 - TSS region transcription start site region 15670
Gm37785 1 185329451 to 185331858 2407 + unclassified gene predicted gene, 37785
Cpgi1171 1 185331899 to 185332404 505 CpG island CpG island 1171
Tssr10602 1 185332143 to 185332216 73 + TSS region transcription start site region 10602
Bpnt1 1 185332149 to 185357777 25628 + protein coding gene bisphosphate 3'-nucleotidase 1
Tssr10603 1 185356628 to 185356640 12 + TSS region transcription start site region 10603
Tssr10604 1 185356643 to 185356659 16 + TSS region transcription start site region 10604
Tssr10605 1 185357035 to 185357045 10 + TSS region transcription start site region 10605
4930532G15Rik 1 185359461 to 185362865 3404 - lincRNA gene RIKEN cDNA 4930532G15 gene
Cpgi1172 1 185362642 to 185363839 1197 CpG island CpG island 1172
Tssr10606 1 185363025 to 185363026 1 + TSS region transcription start site region 10606
Tssr10607 1 185363035 to 185363064 29 + TSS region transcription start site region 10607
Eprs 1 185363044 to 185428360 65316 + protein coding gene glutamyl-prolyl-tRNA synthetase
Tssr10608 1 185363076 to 185363150 74 + TSS region transcription start site region 10608
Tssr10609 1 185411495 to 185411502 7 + TSS region transcription start site region 10609
Tssr10610 1 185418271 to 185418294 23 + TSS region transcription start site region 10610
9630028B13Rik 1 185429357 to 185441819 12462 - antisense lncRNA gene RIKEN cDNA 9630028B13 gene
Tssr10611 1 185431916 to 185431929 13 + TSS region transcription start site region 10611
Tssr10612 1 185431931 to 185431946 15 + TSS region transcription start site region 10612
Tssr10613 1 185431948 to 185431960 12 + TSS region transcription start site region 10613
Tssr10614 1 185431961 to 185431979 18 + TSS region transcription start site region 10614
Tssr15671 1 185441715 to 185441735 20 - TSS region transcription start site region 15671
Tssr15672 1 185441741 to 185441761 20 - TSS region transcription start site region 15672
Gm2061 1 185447116 to 185455568 8452 - lincRNA gene predicted gene 2061
Tssr15673 1 185451601 to 185451620 19 - TSS region transcription start site region 15673
Tssr15674 1 185451622 to 185451656 34 - TSS region transcription start site region 15674
Cpgi1173 1 185454713 to 185455754 1041 CpG island CpG island 1173
Tssr10615 1 185454775 to 185454800 25 + TSS region transcription start site region 10615
Tssr10616 1 185454803 to 185454817 14 + TSS region transcription start site region 10616
Slc30a10 1 185454848 to 185468762 13914 + protein coding gene solute carrier family 30, member 10
Tssr10617 1 185454913 to 185454931 18 + TSS region transcription start site region 10617
Tssr10618 1 185454980 to 185454995 15 + TSS region transcription start site region 10618
Tssr10619 1 185455052 to 185455088 36 + TSS region transcription start site region 10619
Scc3 1 185481626 to 185481760 134 QTL colon tumor susceptibility 3
D1Mit208 1 185481626 to 185481760 134 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 208
Gm34969 1 185487269 to 185502904 15635 + lncRNA gene predicted gene, 34969
Tssr10620 1 185487288 to 185487299 11 + TSS region transcription start site region 10620
Tssr10621 1 185487328 to 185487344 16 + TSS region transcription start site region 10621
5033404E19Rik 1 185497306 to 185498014 708 + pseudogene RIKEN cDNA 5033404E19 gene
Tssr10622 1 185534380 to 185534413 33 + TSS region transcription start site region 10622
Gm35023 1 185618605 to 185644334 25729 + lncRNA gene predicted gene, 35023
Gm38093 1 185744803 to 185757772 12969 + lincRNA gene predicted gene, 38093
Gm9722 1 185878084 to 185878885 801 - pseudogene predicted gene 9722
Tssr365 1 185969950 to 185969957 7 + TSS region transcription start site region 365
Gm39729 1 186031078 to 186034344 3266 - lncRNA gene predicted gene, 39729
Lyplal1 1 186087732 to 186117310 29578 - protein coding gene lysophospholipase-like 1
Gm38268 1 186112181 to 186112373 192 - unclassified gene predicted gene, 38268
Cpgi1174 1 186116889 to 186117447 558 CpG island CpG island 1174
Tssr15675 1 186117251 to 186117294 43 - TSS region transcription start site region 15675
Gm23821 1 186123201 to 186123306 105 + rRNA gene predicted gene, 23821
Gm35201 1 186137851 to 186154619 16768 + lncRNA gene predicted gene, 35201
Tssr10623 1 186137939 to 186137971 32 + TSS region transcription start site region 10623
Gm37134 1 186177338 to 186223789 46451 + lincRNA gene predicted gene, 37134
D1Mit407 1 186177593 to 186177711 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 407
Bmd1c 1 186177593 to 189571420 3393827 QTL bone mineral density 1c
Gm37272 1 186182257 to 186182744 487 + unclassified gene predicted gene, 37272
D1Mit361 1 186261829 to 186261999 170 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 361
D1Mit361.3 1 186262012 to 186262127 115 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 361.3
Tssr15676 1 186309313 to 186309314 1 - TSS region transcription start site region 15676
Gm37491 1 186347315 to 186348425 1110 + unclassified gene predicted gene, 37491
Gm35341 1 186407824 to 186420512 12688 + lncRNA gene predicted gene, 35341
Gm35426 1 186463840 to 186486460 22620 - lncRNA gene predicted gene, 35426