Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:184836102-185341319

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Marc2 1 184813068 to 184846446 33378 - protein coding gene mitochondrial amidoxime reducing component 2
Cpgi1163 1 184845265 to 184846233 968 CpG island CpG island 1163
Tssr15658 1 184845838 to 184845854 16 - TSS region transcription start site region 15658
Tssr15659 1 184845860 to 184845871 11 - TSS region transcription start site region 15659
Gm34451 1 184845989 to 184854483 8494 + lncRNA gene predicted gene, 34451
Cpgi1164 1 184851944 to 184852124 180 CpG island CpG island 1164
Gm23780 1 184858138 to 184858412 274 - unclassified non-coding RNA gene predicted gene, 23780
Tssr15660 1 184858411 to 184858417 6 - TSS region transcription start site region 15660
Gm39727 1 184866046 to 184870749 4703 + lncRNA gene predicted gene, 39727
C130074G19Rik 1 184871926 to 184883036 11110 - protein coding gene RIKEN cDNA C130074G19 gene
Tssr15661 1 184873554 to 184873579 25 - TSS region transcription start site region 15661
Cpgi1165 1 184874133 to 184874606 473 CpG island CpG island 1165
Gm34602 1 184876223 to 184882281 6058 + lncRNA gene predicted gene, 34602
Cpgi1166 1 184882300 to 184883441 1141 CpG island CpG island 1166
Tssr15662 1 184882991 to 184883031 40 - TSS region transcription start site region 15662
Gm17905 1 184884235 to 184884739 504 - pseudogene predicted gene, 17905
Mark1 1 184896789 to 184999570 102781 - protein coding gene MAP/microtubule affinity regulating kinase 1
Gm38251 1 184923136 to 184942500 19364 + antisense lncRNA gene predicted gene, 38251
D1Mit152 1 184939026 to 184939118 92 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 152
Cpgi1167 1 184999058 to 185000529 1471 CpG island CpG island 1167
Gm39728 1 184999578 to 185025266 25688 + lncRNA gene predicted gene, 39728
Tssr15663 1 184999878 to 184999974 96 - TSS region transcription start site region 15663
Tssr15664 1 184999999 to 185000012 13 - TSS region transcription start site region 15664
Twq5 1 185000000 to 3000000 -182000000 QTL testis weight QTL 5
Tssr15665 1 185074175 to 185074177 2 - TSS region transcription start site region 15665
Gm34732 1 185082738 to 185085964 3226 - lincRNA gene predicted gene, 34732
Tssr15666 1 185085929 to 185085942 13 - TSS region transcription start site region 15666
Tssr15667 1 185085951 to 185085968 17 - TSS region transcription start site region 15667
4930433J02Rik 1 185086102 to 185091319 5217 + lincRNA gene RIKEN cDNA 4930433J02 gene
Gm37662 1 185091991 to 185099547 7556 + lincRNA gene predicted gene, 37662
Gm34797 1 185098819 to 185118365 19546 - lncRNA gene predicted gene, 34797
Cpgi1168 1 185193114 to 185193296 182 CpG island CpG island 1168
Cpgi1169 1 185203548 to 185204578 1030 CpG island CpG island 1169
Tssr15668 1 185203739 to 185203743 4 - TSS region transcription start site region 15668
Tssr15669 1 185203818 to 185203838 20 - TSS region transcription start site region 15669
Tssr10591 1 185204109 to 185204163 54 + TSS region transcription start site region 10591
Rab3gap2 1 185204117 to 185286759 82642 + protein coding gene RAB3 GTPase activating protein subunit 2
Tssr10592 1 185204165 to 185204183 18 + TSS region transcription start site region 10592
Tssr10593 1 185204232 to 185204243 11 + TSS region transcription start site region 10593
Tssr10594 1 185205928 to 185205937 9 + TSS region transcription start site region 10594
Tssr10595 1 185210706 to 185210732 26 + TSS region transcription start site region 10595
D1Mit221 1 185222387 to 185222504 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 221
Skmw6 1 185222387 to 185222504 117 QTL skeletal muscle weight 6
Snora36b 1 185242926 to 185243038 112 + snoRNA gene small nucleolar RNA, H/ACA box 36B
Mir664 1 185242975 to 185243043 68 + miRNA gene microRNA 664
Gm34882 1 185243709 to 185247884 4175 - antisense lncRNA gene predicted gene, 34882
Tssr10596 1 185247956 to 185247988 32 + TSS region transcription start site region 10596
Tssr10597 1 185252721 to 185252756 35 + TSS region transcription start site region 10597
Tssr10598 1 185270986 to 185271006 20 + TSS region transcription start site region 10598
Tssr10599 1 185283057 to 185283070 13 + TSS region transcription start site region 10599
Tssr363 1 185283125 to 185283152 27 + TSS region transcription start site region 363
Tssr364 1 185283291 to 185283293 2 + TSS region transcription start site region 364
Iars2 1 185286662 to 185329416 42754 - protein coding gene isoleucine-tRNA synthetase 2, mitochondrial
Tssr10600 1 185312185 to 185312200 15 + TSS region transcription start site region 10600
2010103J01Rik 1 185312187 to 185313803 1616 + antisense lncRNA gene RIKEN cDNA 2010103J01 gene
Mir194-1 1 185313319 to 185313385 66 + miRNA gene microRNA 194-1
Mirc38 1 185313319 to 185313692 373 complex/cluster/region microRNA cluster 38, including Mir194-1 through Mir215
Mir215 1 185313581 to 185313692 111 + miRNA gene microRNA 215
Tssr10601 1 185313670 to 185313674 4 + TSS region transcription start site region 10601
Cpgi1170 1 185328598 to 185329617 1019 CpG island CpG island 1170
Tssr15670 1 185329331 to 185329401 70 - TSS region transcription start site region 15670
Gm37785 1 185329451 to 185331858 2407 + unclassified gene predicted gene, 37785
Cpgi1171 1 185331899 to 185332404 505 CpG island CpG island 1171
Tssr10602 1 185332143 to 185332216 73 + TSS region transcription start site region 10602
Bpnt1 1 185332149 to 185357777 25628 + protein coding gene bisphosphate 3'-nucleotidase 1