Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:184616102-185561319

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37800 1 184610280 to 184629473 19193 - lincRNA gene predicted gene, 37800
Rpl21-ps1 1 184617248 to 184617727 479 + pseudogene ribosomal protein 21, pseudogene 1
Tssr10586 1 184694960 to 184694968 8 + TSS region transcription start site region 10586
Gm38358 1 184695034 to 184695461 427 + pseudogene predicted gene, 38358
4930488B22Rik 1 184712497 to 184718989 6492 + lincRNA gene RIKEN cDNA 4930488B22 gene
Cpgi1156 1 184718338 to 184718827 489 CpG island CpG island 1156
Hlx 1 184727143 to 184732493 5350 - protein coding gene H2.0-like homeobox
Cpgi1157 1 184727398 to 184728149 751 CpG island CpG island 1157
Tssr10587 1 184728950 to 184728960 10 + TSS region transcription start site region 10587
Tssr10588 1 184729513 to 184729532 19 + TSS region transcription start site region 10588
Fembrs5 1 184730317 to 184730461 144 QTL femur breaking strength 5
Femwf7 1 184730317 to 184730461 144 QTL femur work to failure 7
Zit1 1 184730317 to 184730461 144 QTL zinc induced tolerance 1
D1Mit291 1 184730317 to 184730461 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 291
Cpgi1158 1 184731518 to 184733239 1721 CpG island CpG island 1158
Tssr15637 1 184731864 to 184731882 18 - TSS region transcription start site region 15637
Tssr15638 1 184731936 to 184731949 13 - TSS region transcription start site region 15638
Tssr15639 1 184732107 to 184732118 11 - TSS region transcription start site region 15639
Tssr15640 1 184732129 to 184732149 20 - TSS region transcription start site region 15640
Tssr15641 1 184732159 to 184732187 28 - TSS region transcription start site region 15641
Tssr15642 1 184732428 to 184732439 11 - TSS region transcription start site region 15642
Tssr15643 1 184732444 to 184732491 47 - TSS region transcription start site region 15643
Tssr15644 1 184732496 to 184732525 29 - TSS region transcription start site region 15644
Tssr15645 1 184732531 to 184732545 14 - TSS region transcription start site region 15645
Tssr15646 1 184732616 to 184732627 11 - TSS region transcription start site region 15646
Tssr15647 1 184732632 to 184732694 62 - TSS region transcription start site region 15647
Tssr10589 1 184732784 to 184732804 20 + TSS region transcription start site region 10589
Cpgi1159 1 184734575 to 184734746 171 CpG island CpG island 1159
Tssr15648 1 184735020 to 184735027 7 - TSS region transcription start site region 15648
Tssr10590 1 184735406 to 184735409 3 + TSS region transcription start site region 10590
Gm34342 1 184736977 to 184739520 2543 + lincRNA gene predicted gene, 34342
D1Mit220 1 184774267 to 184774403 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 220
Marc1 1 184786767 to 184811308 24541 - protein coding gene mitochondrial amidoxime reducing component 1
Tssr15649 1 184792823 to 184792829 6 - TSS region transcription start site region 15649
Cpgi1160 1 184793139 to 184793648 509 CpG island CpG island 1160
Cpgi1161 1 184810661 to 184811337 676 CpG island CpG island 1161
Tssr15650 1 184810980 to 184810991 11 - TSS region transcription start site region 15650
Tssr15651 1 184811156 to 184811163 7 - TSS region transcription start site region 15651
Tssr15652 1 184811170 to 184811203 33 - TSS region transcription start site region 15652
Tssr15653 1 184811259 to 184811264 5 - TSS region transcription start site region 15653
Tssr15654 1 184811286 to 184811303 17 - TSS region transcription start site region 15654
Tssr15655 1 184811304 to 184811314 10 - TSS region transcription start site region 15655
Marc2 1 184813068 to 184846446 33378 - protein coding gene mitochondrial amidoxime reducing component 2
Mir1981 1 184822407 to 184822488 81 - miRNA gene microRNA 1981
Cpgi1162 1 184827181 to 184827712 531 CpG island CpG island 1162
Tssr15656 1 184827221 to 184827243 22 - TSS region transcription start site region 15656
Tssr15657 1 184827246 to 184827273 27 - TSS region transcription start site region 15657
Cpgi1163 1 184845265 to 184846233 968 CpG island CpG island 1163
Tssr15658 1 184845838 to 184845854 16 - TSS region transcription start site region 15658
Tssr15659 1 184845860 to 184845871 11 - TSS region transcription start site region 15659
Gm34451 1 184845989 to 184854483 8494 + lncRNA gene predicted gene, 34451
Cpgi1164 1 184851944 to 184852124 180 CpG island CpG island 1164
Gm23780 1 184858138 to 184858412 274 - unclassified non-coding RNA gene predicted gene, 23780
Tssr15660 1 184858411 to 184858417 6 - TSS region transcription start site region 15660
Gm39727 1 184866046 to 184870749 4703 + lncRNA gene predicted gene, 39727
C130074G19Rik 1 184871926 to 184883036 11110 - protein coding gene RIKEN cDNA C130074G19 gene
Tssr15661 1 184873554 to 184873579 25 - TSS region transcription start site region 15661
Cpgi1165 1 184874133 to 184874606 473 CpG island CpG island 1165
Gm34602 1 184876223 to 184882281 6058 + lncRNA gene predicted gene, 34602
Cpgi1166 1 184882300 to 184883441 1141 CpG island CpG island 1166
Tssr15662 1 184882991 to 184883031 40 - TSS region transcription start site region 15662
Gm17905 1 184884235 to 184884739 504 - pseudogene predicted gene, 17905
Mark1 1 184896789 to 184999570 102781 - protein coding gene MAP/microtubule affinity regulating kinase 1
Gm38251 1 184923136 to 184942500 19364 + antisense lncRNA gene predicted gene, 38251
D1Mit152 1 184939026 to 184939118 92 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 152
Cpgi1167 1 184999058 to 185000529 1471 CpG island CpG island 1167
Gm39728 1 184999578 to 185025266 25688 + lncRNA gene predicted gene, 39728
Tssr15663 1 184999878 to 184999974 96 - TSS region transcription start site region 15663
Tssr15664 1 184999999 to 185000012 13 - TSS region transcription start site region 15664
Twq5 1 185000000 to 3000000 -182000000 QTL testis weight QTL 5
Tssr15665 1 185074175 to 185074177 2 - TSS region transcription start site region 15665
Gm34732 1 185082738 to 185085964 3226 - lincRNA gene predicted gene, 34732
Tssr15666 1 185085929 to 185085942 13 - TSS region transcription start site region 15666
Tssr15667 1 185085951 to 185085968 17 - TSS region transcription start site region 15667
4930433J02Rik 1 185086102 to 185091319 5217 + lincRNA gene RIKEN cDNA 4930433J02 gene
Gm37662 1 185091991 to 185099547 7556 + lincRNA gene predicted gene, 37662
Gm34797 1 185098819 to 185118365 19546 - lncRNA gene predicted gene, 34797
Cpgi1168 1 185193114 to 185193296 182 CpG island CpG island 1168
Cpgi1169 1 185203548 to 185204578 1030 CpG island CpG island 1169
Tssr15668 1 185203739 to 185203743 4 - TSS region transcription start site region 15668
Tssr15669 1 185203818 to 185203838 20 - TSS region transcription start site region 15669
Tssr10591 1 185204109 to 185204163 54 + TSS region transcription start site region 10591
Rab3gap2 1 185204117 to 185286759 82642 + protein coding gene RAB3 GTPase activating protein subunit 2
Tssr10592 1 185204165 to 185204183 18 + TSS region transcription start site region 10592
Tssr10593 1 185204232 to 185204243 11 + TSS region transcription start site region 10593
Tssr10594 1 185205928 to 185205937 9 + TSS region transcription start site region 10594
Tssr10595 1 185210706 to 185210732 26 + TSS region transcription start site region 10595
D1Mit221 1 185222387 to 185222504 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 221
Skmw6 1 185222387 to 185222504 117 QTL skeletal muscle weight 6
Snora36b 1 185242926 to 185243038 112 + snoRNA gene small nucleolar RNA, H/ACA box 36B
Mir664 1 185242975 to 185243043 68 + miRNA gene microRNA 664
Gm34882 1 185243709 to 185247884 4175 - antisense lncRNA gene predicted gene, 34882
Tssr10596 1 185247956 to 185247988 32 + TSS region transcription start site region 10596
Tssr10597 1 185252721 to 185252756 35 + TSS region transcription start site region 10597
Tssr10598 1 185270986 to 185271006 20 + TSS region transcription start site region 10598
Tssr10599 1 185283057 to 185283070 13 + TSS region transcription start site region 10599
Tssr363 1 185283125 to 185283152 27 + TSS region transcription start site region 363
Tssr364 1 185283291 to 185283293 2 + TSS region transcription start site region 364
Iars2 1 185286662 to 185329416 42754 - protein coding gene isoleucine-tRNA synthetase 2, mitochondrial
Tssr10600 1 185312185 to 185312200 15 + TSS region transcription start site region 10600
2010103J01Rik 1 185312187 to 185313803 1616 + antisense lncRNA gene RIKEN cDNA 2010103J01 gene
Mir194-1 1 185313319 to 185313385 66 + miRNA gene microRNA 194-1
Mirc38 1 185313319 to 185313692 373 complex/cluster/region microRNA cluster 38, including Mir194-1 through Mir215
Mir215 1 185313581 to 185313692 111 + miRNA gene microRNA 215
Tssr10601 1 185313670 to 185313674 4 + TSS region transcription start site region 10601
Cpgi1170 1 185328598 to 185329617 1019 CpG island CpG island 1170
Tssr15670 1 185329331 to 185329401 70 - TSS region transcription start site region 15670
Gm37785 1 185329451 to 185331858 2407 + unclassified gene predicted gene, 37785
Cpgi1171 1 185331899 to 185332404 505 CpG island CpG island 1171
Tssr10602 1 185332143 to 185332216 73 + TSS region transcription start site region 10602
Bpnt1 1 185332149 to 185357777 25628 + protein coding gene bisphosphate 3'-nucleotidase 1
Tssr10603 1 185356628 to 185356640 12 + TSS region transcription start site region 10603
Tssr10604 1 185356643 to 185356659 16 + TSS region transcription start site region 10604
Tssr10605 1 185357035 to 185357045 10 + TSS region transcription start site region 10605
4930532G15Rik 1 185359461 to 185362865 3404 - lincRNA gene RIKEN cDNA 4930532G15 gene
Cpgi1172 1 185362642 to 185363839 1197 CpG island CpG island 1172
Tssr10606 1 185363025 to 185363026 1 + TSS region transcription start site region 10606
Tssr10607 1 185363035 to 185363064 29 + TSS region transcription start site region 10607
Eprs 1 185363044 to 185428360 65316 + protein coding gene glutamyl-prolyl-tRNA synthetase
Tssr10608 1 185363076 to 185363150 74 + TSS region transcription start site region 10608
Tssr10609 1 185411495 to 185411502 7 + TSS region transcription start site region 10609
Tssr10610 1 185418271 to 185418294 23 + TSS region transcription start site region 10610
9630028B13Rik 1 185429357 to 185441819 12462 - antisense lncRNA gene RIKEN cDNA 9630028B13 gene
Tssr10611 1 185431916 to 185431929 13 + TSS region transcription start site region 10611
Tssr10612 1 185431931 to 185431946 15 + TSS region transcription start site region 10612
Tssr10613 1 185431948 to 185431960 12 + TSS region transcription start site region 10613
Tssr10614 1 185431961 to 185431979 18 + TSS region transcription start site region 10614
Tssr15671 1 185441715 to 185441735 20 - TSS region transcription start site region 15671
Tssr15672 1 185441741 to 185441761 20 - TSS region transcription start site region 15672
Gm2061 1 185447116 to 185455568 8452 - lincRNA gene predicted gene 2061
Tssr15673 1 185451601 to 185451620 19 - TSS region transcription start site region 15673
Tssr15674 1 185451622 to 185451656 34 - TSS region transcription start site region 15674
Cpgi1173 1 185454713 to 185455754 1041 CpG island CpG island 1173
Tssr10615 1 185454775 to 185454800 25 + TSS region transcription start site region 10615
Tssr10616 1 185454803 to 185454817 14 + TSS region transcription start site region 10616
Slc30a10 1 185454848 to 185468762 13914 + protein coding gene solute carrier family 30, member 10
Tssr10617 1 185454913 to 185454931 18 + TSS region transcription start site region 10617
Tssr10618 1 185454980 to 185454995 15 + TSS region transcription start site region 10618
Tssr10619 1 185455052 to 185455088 36 + TSS region transcription start site region 10619
Scc3 1 185481626 to 185481760 134 QTL colon tumor susceptibility 3
D1Mit208 1 185481626 to 185481760 134 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 208
Gm34969 1 185487269 to 185502904 15635 + lncRNA gene predicted gene, 34969
Tssr10620 1 185487288 to 185487299 11 + TSS region transcription start site region 10620
Tssr10621 1 185487328 to 185487344 16 + TSS region transcription start site region 10621
5033404E19Rik 1 185497306 to 185498014 708 + pseudogene RIKEN cDNA 5033404E19 gene
Tssr10622 1 185534380 to 185534413 33 + TSS region transcription start site region 10622