Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:184310034-185080461

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34177 1 184315136 to 184329389 14253 - lncRNA gene predicted gene, 34177
Tssr10582 1 184358323 to 184358344 21 + TSS region transcription start site region 10582
Gm37223 1 184358329 to 184394271 35942 + lincRNA gene predicted gene, 37223
Tssr10583 1 184372243 to 184372248 5 + TSS region transcription start site region 10583
Gm37712 1 184376344 to 184382441 6097 - lincRNA gene predicted gene, 37712
Gm34229 1 184428655 to 184432101 3446 - lncRNA gene predicted gene, 34229
2900092O11Rik 1 184442980 to 184443734 754 + unclassified gene RIKEN cDNA 2900092O11 gene
Tssr15634 1 184453376 to 184453390 14 - TSS region transcription start site region 15634
Tssr15635 1 184478123 to 184478162 39 - TSS region transcription start site region 15635
Tssr10584 1 184478262 to 184478271 9 + TSS region transcription start site region 10584
1700112H15Rik 1 184527841 to 184557691 29850 - lincRNA gene RIKEN cDNA 1700112H15 gene
Tssr10585 1 184536767 to 184536770 3 + TSS region transcription start site region 10585
Gm23349 1 184580109 to 184580206 97 - snRNA gene predicted gene, 23349
Gm37800 1 184610280 to 184629473 19193 - lincRNA gene predicted gene, 37800
Tssr15636 1 184612909 to 184612917 8 - TSS region transcription start site region 15636
D1Mit272 1 184613479 to 184613628 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 272
Rpl21-ps1 1 184617248 to 184617727 479 + pseudogene ribosomal protein 21, pseudogene 1
Tssr10586 1 184694960 to 184694968 8 + TSS region transcription start site region 10586
Gm38358 1 184695034 to 184695461 427 + pseudogene predicted gene, 38358
4930488B22Rik 1 184712497 to 184718989 6492 + lincRNA gene RIKEN cDNA 4930488B22 gene
Cpgi1156 1 184718338 to 184718827 489 CpG island CpG island 1156
Hlx 1 184727143 to 184732493 5350 - protein coding gene H2.0-like homeobox
Cpgi1157 1 184727398 to 184728149 751 CpG island CpG island 1157
Tssr10587 1 184728950 to 184728960 10 + TSS region transcription start site region 10587
Tssr10588 1 184729513 to 184729532 19 + TSS region transcription start site region 10588
D1Mit291 1 184730317 to 184730461 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 291
Zit1 1 184730317 to 184730461 144 QTL zinc induced tolerance 1
Fembrs5 1 184730317 to 184730461 144 QTL femur breaking strength 5
Femwf7 1 184730317 to 184730461 144 QTL femur work to failure 7
Cpgi1158 1 184731518 to 184733239 1721 CpG island CpG island 1158
Tssr15637 1 184731864 to 184731882 18 - TSS region transcription start site region 15637
Tssr15638 1 184731936 to 184731949 13 - TSS region transcription start site region 15638
Tssr15639 1 184732107 to 184732118 11 - TSS region transcription start site region 15639
Tssr15640 1 184732129 to 184732149 20 - TSS region transcription start site region 15640
Tssr15641 1 184732159 to 184732187 28 - TSS region transcription start site region 15641
Tssr15642 1 184732428 to 184732439 11 - TSS region transcription start site region 15642
Tssr15643 1 184732444 to 184732491 47 - TSS region transcription start site region 15643
Tssr15644 1 184732496 to 184732525 29 - TSS region transcription start site region 15644
Tssr15645 1 184732531 to 184732545 14 - TSS region transcription start site region 15645
Tssr15646 1 184732616 to 184732627 11 - TSS region transcription start site region 15646
Tssr15647 1 184732632 to 184732694 62 - TSS region transcription start site region 15647
Tssr10589 1 184732784 to 184732804 20 + TSS region transcription start site region 10589
Cpgi1159 1 184734575 to 184734746 171 CpG island CpG island 1159
Tssr15648 1 184735020 to 184735027 7 - TSS region transcription start site region 15648
Tssr10590 1 184735406 to 184735409 3 + TSS region transcription start site region 10590
Gm34342 1 184736977 to 184739520 2543 + lincRNA gene predicted gene, 34342
D1Mit220 1 184774267 to 184774403 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 220
Marc1 1 184786767 to 184811308 24541 - protein coding gene mitochondrial amidoxime reducing component 1
Tssr15649 1 184792823 to 184792829 6 - TSS region transcription start site region 15649
Cpgi1160 1 184793139 to 184793648 509 CpG island CpG island 1160
Cpgi1161 1 184810661 to 184811337 676 CpG island CpG island 1161
Tssr15650 1 184810980 to 184810991 11 - TSS region transcription start site region 15650
Tssr15651 1 184811156 to 184811163 7 - TSS region transcription start site region 15651
Tssr15652 1 184811170 to 184811203 33 - TSS region transcription start site region 15652
Tssr15653 1 184811259 to 184811264 5 - TSS region transcription start site region 15653
Tssr15654 1 184811286 to 184811303 17 - TSS region transcription start site region 15654
Tssr15655 1 184811304 to 184811314 10 - TSS region transcription start site region 15655
Marc2 1 184813068 to 184846446 33378 - protein coding gene mitochondrial amidoxime reducing component 2
Mir1981 1 184822407 to 184822488 81 - miRNA gene microRNA 1981
Cpgi1162 1 184827181 to 184827712 531 CpG island CpG island 1162
Tssr15656 1 184827221 to 184827243 22 - TSS region transcription start site region 15656
Tssr15657 1 184827246 to 184827273 27 - TSS region transcription start site region 15657
Cpgi1163 1 184845265 to 184846233 968 CpG island CpG island 1163
Tssr15658 1 184845838 to 184845854 16 - TSS region transcription start site region 15658
Tssr15659 1 184845860 to 184845871 11 - TSS region transcription start site region 15659
Gm34451 1 184845989 to 184854483 8494 + lncRNA gene predicted gene, 34451
Cpgi1164 1 184851944 to 184852124 180 CpG island CpG island 1164
Gm23780 1 184858138 to 184858412 274 - unclassified non-coding RNA gene predicted gene, 23780
Tssr15660 1 184858411 to 184858417 6 - TSS region transcription start site region 15660
Gm39727 1 184866046 to 184870749 4703 + lncRNA gene predicted gene, 39727
C130074G19Rik 1 184871926 to 184883036 11110 - protein coding gene RIKEN cDNA C130074G19 gene
Tssr15661 1 184873554 to 184873579 25 - TSS region transcription start site region 15661
Cpgi1165 1 184874133 to 184874606 473 CpG island CpG island 1165
Gm34602 1 184876223 to 184882281 6058 + lncRNA gene predicted gene, 34602
Cpgi1166 1 184882300 to 184883441 1141 CpG island CpG island 1166
Tssr15662 1 184882991 to 184883031 40 - TSS region transcription start site region 15662
Gm17905 1 184884235 to 184884739 504 - pseudogene predicted gene, 17905
Mark1 1 184896789 to 184999570 102781 - protein coding gene MAP/microtubule affinity regulating kinase 1
Gm38251 1 184923136 to 184942500 19364 + antisense lncRNA gene predicted gene, 38251
D1Mit152 1 184939026 to 184939118 92 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 152
Cpgi1167 1 184999058 to 185000529 1471 CpG island CpG island 1167
Gm39728 1 184999578 to 185025266 25688 + lncRNA gene predicted gene, 39728
Tssr15663 1 184999878 to 184999974 96 - TSS region transcription start site region 15663
Tssr15664 1 184999999 to 185000012 13 - TSS region transcription start site region 15664
Twq5 1 185000000 to 3000000 -182000000 QTL testis weight QTL 5
Tssr15665 1 185074175 to 185074177 2 - TSS region transcription start site region 15665