Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:183283130-184553276

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Brox 1 183276352 to 183297269 20917 - protein coding gene BRO1 domain and CAAX motif containing
Tssr343 1 183289840 to 183289850 10 + TSS region transcription start site region 343
Tssr344 1 183296944 to 183297015 71 - TSS region transcription start site region 344
Tssr345 1 183297029 to 183297073 44 + TSS region transcription start site region 345
Aida 1 183297060 to 183324501 27441 + protein coding gene axin interactor, dorsalization associated
Tssr346 1 183297265 to 183297305 40 - TSS region transcription start site region 346
Tssr347 1 183297307 to 183297323 16 + TSS region transcription start site region 347
Tssr348 1 183298329 to 183298332 3 - TSS region transcription start site region 348
Mia3 1 183326725 to 183369553 42828 - protein coding gene melanoma inhibitory activity 3
Tssr349 1 183345353 to 183345388 35 - TSS region transcription start site region 349
Gm34102 1 183345389 to 183349574 4185 + lncRNA gene predicted gene, 34102
Tssr350 1 183345400 to 183345423 23 - TSS region transcription start site region 350
Tssr351 1 183345432 to 183345487 55 - TSS region transcription start site region 351
Tssr352 1 183345541 to 183345554 13 + TSS region transcription start site region 352
Tssr353 1 183369526 to 183369563 37 - TSS region transcription start site region 353
Tssr354 1 183369797 to 183369818 21 + TSS region transcription start site region 354
Gm37339 1 183371076 to 183371467 391 + pseudogene predicted gene, 37339
Tssr355 1 183388953 to 183389013 60 + TSS region transcription start site region 355
Taf1a 1 183388981 to 183410198 21217 + protein coding gene TATA-box binding protein associated factor, RNA polymerase I, A
Gm37986 1 183414466 to 183414848 382 + lincRNA gene predicted gene, 37986
Hhipl2 1 183418215 to 183436808 18593 + protein coding gene hedgehog interacting protein-like 2
Tssr356 1 183418453 to 183418465 12 + TSS region transcription start site region 356
Tssr357 1 183418489 to 183418494 5 + TSS region transcription start site region 357
Tssr358 1 183418508 to 183418511 3 + TSS region transcription start site region 358
Tssr359 1 183418520 to 183418529 9 + TSS region transcription start site region 359
Tssr360 1 183420369 to 183420380 11 - TSS region transcription start site region 360
Tssr361 1 183420650 to 183420659 9 + TSS region transcription start site region 361
Gm37214 1 183420655 to 183422213 1558 + sense intronic lncRNA gene predicted gene, 37214
Tssr15626 1 183524356 to 183524361 5 - TSS region transcription start site region 15626
Ewc2 1 183561854 to 183561854 0 QTL ethanol withdrawal and consumption 2
Gm33973 1 183563512 to 183564045 533 + lincRNA gene predicted gene, 33973
Tssr10574 1 183600762 to 183600771 9 + TSS region transcription start site region 10574
Z7139 1 183626133 to 183626311 178 DNA segment DNA segment, Z7139
Tssr10575 1 183631439 to 183631450 11 + TSS region transcription start site region 10575
Gm39724 1 183631469 to 183665432 33963 + lncRNA gene predicted gene, 39724
Gm8214 1 183681781 to 183682131 350 - pseudogene predicted gene 8214
Gm34068 1 183748977 to 183809746 60769 + lincRNA gene predicted gene, 34068
Gm38332 1 183918130 to 183918276 146 + pseudogene predicted gene, 38332
Gm38108 1 183928405 to 183929230 825 + lincRNA gene predicted gene, 38108
Gm34130 1 183937309 to 183945805 8496 + lncRNA gene predicted gene, 34130
Gm39725 1 184013315 to 184022470 9155 + lncRNA gene predicted gene, 39725
1700056E22Rik 1 184033032 to 184033998 966 - protein coding gene RIKEN cDNA 1700056E22 gene
Cpgi1155 1 184033276 to 184034616 1340 CpG island CpG island 1155
Tssr10576 1 184033672 to 184033685 13 + TSS region transcription start site region 10576
Tssr15627 1 184033714 to 184033721 7 - TSS region transcription start site region 15627
Tssr15628 1 184033767 to 184033781 14 - TSS region transcription start site region 15628
Tssr15629 1 184034002 to 184034016 14 - TSS region transcription start site region 15629
Tssr15630 1 184034125 to 184034144 19 - TSS region transcription start site region 15630
Tssr15631 1 184034148 to 184034186 38 - TSS region transcription start site region 15631
Tssr15632 1 184034257 to 184034268 11 - TSS region transcription start site region 15632
Tssr15633 1 184034296 to 184034308 12 - TSS region transcription start site region 15633
Tssr10577 1 184034375 to 184034386 11 + TSS region transcription start site region 10577
Tssr10578 1 184034426 to 184034437 11 + TSS region transcription start site region 10578
Tssr10579 1 184034453 to 184034473 20 + TSS region transcription start site region 10579
Dusp10 1 184034461 to 184075636 41175 + protein coding gene dual specificity phosphatase 10
Tssr10580 1 184039542 to 184039557 15 + TSS region transcription start site region 10580
Tssr10581 1 184118272 to 184118277 5 + TSS region transcription start site region 10581
Tssr362 1 184277117 to 184277124 7 - TSS region transcription start site region 362
Gm34177 1 184315136 to 184329389 14253 - lncRNA gene predicted gene, 34177
Tssr10582 1 184358323 to 184358344 21 + TSS region transcription start site region 10582
Gm37223 1 184358329 to 184394271 35942 + lincRNA gene predicted gene, 37223
Tssr10583 1 184372243 to 184372248 5 + TSS region transcription start site region 10583
Gm37712 1 184376344 to 184382441 6097 - lincRNA gene predicted gene, 37712
Gm34229 1 184428655 to 184432101 3446 - lncRNA gene predicted gene, 34229
2900092O11Rik 1 184442980 to 184443734 754 + unclassified gene RIKEN cDNA 2900092O11 gene
Tssr15634 1 184453376 to 184453390 14 - TSS region transcription start site region 15634
Tssr15635 1 184478123 to 184478162 39 - TSS region transcription start site region 15635
Tssr10584 1 184478262 to 184478271 9 + TSS region transcription start site region 10584
1700112H15Rik 1 184527841 to 184557691 29850 - lincRNA gene RIKEN cDNA 1700112H15 gene
Tssr10585 1 184536767 to 184536770 3 + TSS region transcription start site region 10585