Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:182873130-184963276

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169 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Radpf2 1 147249520 to 183092234 35842714 QTL radiation pulmonary fibrosis 2
Susd4 1 182763910 to 182896596 132686 + protein coding gene sushi domain containing 4
Gm37542 1 182907710 to 182910541 2831 + unclassified gene predicted gene, 37542
Cpgi1152 1 182954735 to 182955241 506 CpG island CpG island 1152
Tssr10570 1 182954770 to 182954828 58 + TSS region transcription start site region 10570
Tlr5 1 182954788 to 182976044 21256 + protein coding gene toll-like receptor 5
Tssr10571 1 182957641 to 182957650 9 + TSS region transcription start site region 10571
Tssr10572 1 182959114 to 182959123 9 + TSS region transcription start site region 10572
Cpgi1153 1 182960153 to 182960353 200 CpG island CpG island 1153
Tssr10573 1 182965472 to 182965476 4 + TSS region transcription start site region 10573
Gm38079 1 182976276 to 182976429 153 + lincRNA gene predicted gene, 38079
Cpgi1154 1 182983089 to 182983429 340 CpG island CpG island 1154
Gm33747 1 183054952 to 183065681 10729 - lncRNA gene predicted gene, 33747
Tssr332 1 183058631 to 183058648 17 - TSS region transcription start site region 332
Gm24975 1 183074606 to 183074706 100 + miRNA gene predicted gene, 24975
Disp1 1 183086266 to 183221522 135256 - protein coding gene dispatched RND transporter family member 1
D1Mit406 1 183092111 to 183092234 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 406
Hdlq15 1 183092111 to 183092234 123 QTL HDL QTL 15
Z7134 1 183112736 to 183112885 149 DNA segment DNA segment, Z7134
Tssr333 1 183147464 to 183147487 23 - TSS region transcription start site region 333
Tssr334 1 183147502 to 183147514 12 - TSS region transcription start site region 334
Tssr335 1 183147521 to 183147538 17 - TSS region transcription start site region 335
Tssr336 1 183147549 to 183147563 14 - TSS region transcription start site region 336
Tssr337 1 183154932 to 183154942 10 - TSS region transcription start site region 337
Tssr338 1 183194598 to 183194603 5 - TSS region transcription start site region 338
BC085271 1 183205071 to 183206557 1486 - pseudogene cDNA sequence BC085271
Tssr339 1 183221428 to 183221442 14 - TSS region transcription start site region 339
Tssr340 1 183221446 to 183221457 11 - TSS region transcription start site region 340
Tssr341 1 183221465 to 183221510 45 - TSS region transcription start site region 341
Tssr342 1 183221513 to 183221527 14 - TSS region transcription start site region 342
Gm34287 1 183254300 to 183275732 21432 - protein coding gene predicted gene, 34287
Brox 1 183276352 to 183297269 20917 - protein coding gene BRO1 domain and CAAX motif containing
Tssr343 1 183289840 to 183289850 10 + TSS region transcription start site region 343
Tssr344 1 183296944 to 183297015 71 - TSS region transcription start site region 344
Tssr345 1 183297029 to 183297073 44 + TSS region transcription start site region 345
Aida 1 183297060 to 183324501 27441 + protein coding gene axin interactor, dorsalization associated
Tssr346 1 183297265 to 183297305 40 - TSS region transcription start site region 346
Tssr347 1 183297307 to 183297323 16 + TSS region transcription start site region 347
Tssr348 1 183298329 to 183298332 3 - TSS region transcription start site region 348
Mia3 1 183326725 to 183369553 42828 - protein coding gene melanoma inhibitory activity 3
Tssr349 1 183345353 to 183345388 35 - TSS region transcription start site region 349
Gm34102 1 183345389 to 183349574 4185 + lncRNA gene predicted gene, 34102
Tssr350 1 183345400 to 183345423 23 - TSS region transcription start site region 350
Tssr351 1 183345432 to 183345487 55 - TSS region transcription start site region 351
Tssr352 1 183345541 to 183345554 13 + TSS region transcription start site region 352
Tssr353 1 183369526 to 183369563 37 - TSS region transcription start site region 353
Tssr354 1 183369797 to 183369818 21 + TSS region transcription start site region 354
Gm37339 1 183371076 to 183371467 391 + pseudogene predicted gene, 37339
Tssr355 1 183388953 to 183389013 60 + TSS region transcription start site region 355
Taf1a 1 183388981 to 183410198 21217 + protein coding gene TATA-box binding protein associated factor, RNA polymerase I, A
Gm37986 1 183414466 to 183414848 382 + lincRNA gene predicted gene, 37986
Hhipl2 1 183418215 to 183436808 18593 + protein coding gene hedgehog interacting protein-like 2
Tssr356 1 183418453 to 183418465 12 + TSS region transcription start site region 356
Tssr357 1 183418489 to 183418494 5 + TSS region transcription start site region 357
Tssr358 1 183418508 to 183418511 3 + TSS region transcription start site region 358
Tssr359 1 183418520 to 183418529 9 + TSS region transcription start site region 359
Tssr360 1 183420369 to 183420380 11 - TSS region transcription start site region 360
Tssr361 1 183420650 to 183420659 9 + TSS region transcription start site region 361
Gm37214 1 183420655 to 183422213 1558 + sense intronic lncRNA gene predicted gene, 37214
Tssr15626 1 183524356 to 183524361 5 - TSS region transcription start site region 15626
Ewc2 1 183561854 to 183561854 0 QTL ethanol withdrawal and consumption 2
Gm33973 1 183563512 to 183564045 533 + lincRNA gene predicted gene, 33973
Tssr10574 1 183600762 to 183600771 9 + TSS region transcription start site region 10574
Z7139 1 183626133 to 183626311 178 DNA segment DNA segment, Z7139
Tssr10575 1 183631439 to 183631450 11 + TSS region transcription start site region 10575
Gm39724 1 183631469 to 183665432 33963 + lncRNA gene predicted gene, 39724
Gm8214 1 183681781 to 183682131 350 - pseudogene predicted gene 8214
Gm34068 1 183748977 to 183809746 60769 + lincRNA gene predicted gene, 34068
Gm38332 1 183918130 to 183918276 146 + pseudogene predicted gene, 38332
Gm38108 1 183928405 to 183929230 825 + lincRNA gene predicted gene, 38108
Gm34130 1 183937309 to 183945805 8496 + lncRNA gene predicted gene, 34130
Gm39725 1 184013315 to 184022470 9155 + lncRNA gene predicted gene, 39725
1700056E22Rik 1 184033032 to 184033998 966 - protein coding gene RIKEN cDNA 1700056E22 gene
Cpgi1155 1 184033276 to 184034616 1340 CpG island CpG island 1155
Tssr10576 1 184033672 to 184033685 13 + TSS region transcription start site region 10576
Tssr15627 1 184033714 to 184033721 7 - TSS region transcription start site region 15627
Tssr15628 1 184033767 to 184033781 14 - TSS region transcription start site region 15628
Tssr15629 1 184034002 to 184034016 14 - TSS region transcription start site region 15629
Tssr15630 1 184034125 to 184034144 19 - TSS region transcription start site region 15630
Tssr15631 1 184034148 to 184034186 38 - TSS region transcription start site region 15631
Tssr15632 1 184034257 to 184034268 11 - TSS region transcription start site region 15632
Tssr15633 1 184034296 to 184034308 12 - TSS region transcription start site region 15633
Tssr10577 1 184034375 to 184034386 11 + TSS region transcription start site region 10577
Tssr10578 1 184034426 to 184034437 11 + TSS region transcription start site region 10578
Tssr10579 1 184034453 to 184034473 20 + TSS region transcription start site region 10579
Dusp10 1 184034461 to 184075636 41175 + protein coding gene dual specificity phosphatase 10
Tssr10580 1 184039542 to 184039557 15 + TSS region transcription start site region 10580
Tssr10581 1 184118272 to 184118277 5 + TSS region transcription start site region 10581
Tssr362 1 184277117 to 184277124 7 - TSS region transcription start site region 362
Gm34177 1 184315136 to 184329389 14253 - lncRNA gene predicted gene, 34177
Tssr10582 1 184358323 to 184358344 21 + TSS region transcription start site region 10582
Gm37223 1 184358329 to 184394271 35942 + lincRNA gene predicted gene, 37223
Tssr10583 1 184372243 to 184372248 5 + TSS region transcription start site region 10583
Gm37712 1 184376344 to 184382441 6097 - lincRNA gene predicted gene, 37712
Gm34229 1 184428655 to 184432101 3446 - lncRNA gene predicted gene, 34229
2900092O11Rik 1 184442980 to 184443734 754 + unclassified gene RIKEN cDNA 2900092O11 gene
Tssr15634 1 184453376 to 184453390 14 - TSS region transcription start site region 15634
Tssr15635 1 184478123 to 184478162 39 - TSS region transcription start site region 15635
Tssr10584 1 184478262 to 184478271 9 + TSS region transcription start site region 10584
1700112H15Rik 1 184527841 to 184557691 29850 - lincRNA gene RIKEN cDNA 1700112H15 gene
Tssr10585 1 184536767 to 184536770 3 + TSS region transcription start site region 10585
Gm23349 1 184580109 to 184580206 97 - snRNA gene predicted gene, 23349
Gm37800 1 184610280 to 184629473 19193 - lincRNA gene predicted gene, 37800
Tssr15636 1 184612909 to 184612917 8 - TSS region transcription start site region 15636
D1Mit272 1 184613479 to 184613628 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 272
Rpl21-ps1 1 184617248 to 184617727 479 + pseudogene ribosomal protein 21, pseudogene 1
Tssr10586 1 184694960 to 184694968 8 + TSS region transcription start site region 10586
Gm38358 1 184695034 to 184695461 427 + pseudogene predicted gene, 38358
4930488B22Rik 1 184712497 to 184718989 6492 + lincRNA gene RIKEN cDNA 4930488B22 gene
Cpgi1156 1 184718338 to 184718827 489 CpG island CpG island 1156
Hlx 1 184727143 to 184732493 5350 - protein coding gene H2.0-like homeobox
Cpgi1157 1 184727398 to 184728149 751 CpG island CpG island 1157
Tssr10587 1 184728950 to 184728960 10 + TSS region transcription start site region 10587
Tssr10588 1 184729513 to 184729532 19 + TSS region transcription start site region 10588
Femwf7 1 184730317 to 184730461 144 QTL femur work to failure 7
Fembrs5 1 184730317 to 184730461 144 QTL femur breaking strength 5
Zit1 1 184730317 to 184730461 144 QTL zinc induced tolerance 1
D1Mit291 1 184730317 to 184730461 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 291
Cpgi1158 1 184731518 to 184733239 1721 CpG island CpG island 1158
Tssr15637 1 184731864 to 184731882 18 - TSS region transcription start site region 15637
Tssr15638 1 184731936 to 184731949 13 - TSS region transcription start site region 15638
Tssr15639 1 184732107 to 184732118 11 - TSS region transcription start site region 15639
Tssr15640 1 184732129 to 184732149 20 - TSS region transcription start site region 15640
Tssr15641 1 184732159 to 184732187 28 - TSS region transcription start site region 15641
Tssr15642 1 184732428 to 184732439 11 - TSS region transcription start site region 15642
Tssr15643 1 184732444 to 184732491 47 - TSS region transcription start site region 15643
Tssr15644 1 184732496 to 184732525 29 - TSS region transcription start site region 15644
Tssr15645 1 184732531 to 184732545 14 - TSS region transcription start site region 15645
Tssr15646 1 184732616 to 184732627 11 - TSS region transcription start site region 15646
Tssr15647 1 184732632 to 184732694 62 - TSS region transcription start site region 15647
Tssr10589 1 184732784 to 184732804 20 + TSS region transcription start site region 10589
Cpgi1159 1 184734575 to 184734746 171 CpG island CpG island 1159
Tssr15648 1 184735020 to 184735027 7 - TSS region transcription start site region 15648
Tssr10590 1 184735406 to 184735409 3 + TSS region transcription start site region 10590
Gm34342 1 184736977 to 184739520 2543 + lincRNA gene predicted gene, 34342
D1Mit220 1 184774267 to 184774403 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 220
Marc1 1 184786767 to 184811308 24541 - protein coding gene mitochondrial amidoxime reducing component 1
Tssr15649 1 184792823 to 184792829 6 - TSS region transcription start site region 15649
Cpgi1160 1 184793139 to 184793648 509 CpG island CpG island 1160
Cpgi1161 1 184810661 to 184811337 676 CpG island CpG island 1161
Tssr15650 1 184810980 to 184810991 11 - TSS region transcription start site region 15650
Tssr15651 1 184811156 to 184811163 7 - TSS region transcription start site region 15651
Tssr15652 1 184811170 to 184811203 33 - TSS region transcription start site region 15652
Tssr15653 1 184811259 to 184811264 5 - TSS region transcription start site region 15653
Tssr15654 1 184811286 to 184811303 17 - TSS region transcription start site region 15654
Tssr15655 1 184811304 to 184811314 10 - TSS region transcription start site region 15655
Marc2 1 184813068 to 184846446 33378 - protein coding gene mitochondrial amidoxime reducing component 2
Mir1981 1 184822407 to 184822488 81 - miRNA gene microRNA 1981
Cpgi1162 1 184827181 to 184827712 531 CpG island CpG island 1162
Tssr15656 1 184827221 to 184827243 22 - TSS region transcription start site region 15656
Tssr15657 1 184827246 to 184827273 27 - TSS region transcription start site region 15657
Cpgi1163 1 184845265 to 184846233 968 CpG island CpG island 1163
Tssr15658 1 184845838 to 184845854 16 - TSS region transcription start site region 15658
Tssr15659 1 184845860 to 184845871 11 - TSS region transcription start site region 15659
Gm34451 1 184845989 to 184854483 8494 + lncRNA gene predicted gene, 34451
Cpgi1164 1 184851944 to 184852124 180 CpG island CpG island 1164
Gm23780 1 184858138 to 184858412 274 - unclassified non-coding RNA gene predicted gene, 23780
Tssr15660 1 184858411 to 184858417 6 - TSS region transcription start site region 15660
Gm39727 1 184866046 to 184870749 4703 + lncRNA gene predicted gene, 39727
C130074G19Rik 1 184871926 to 184883036 11110 - protein coding gene RIKEN cDNA C130074G19 gene
Tssr15661 1 184873554 to 184873579 25 - TSS region transcription start site region 15661
Cpgi1165 1 184874133 to 184874606 473 CpG island CpG island 1165
Gm34602 1 184876223 to 184882281 6058 + lncRNA gene predicted gene, 34602
Cpgi1166 1 184882300 to 184883441 1141 CpG island CpG island 1166
Tssr15662 1 184882991 to 184883031 40 - TSS region transcription start site region 15662
Gm17905 1 184884235 to 184884739 504 - pseudogene predicted gene, 17905
Mark1 1 184896789 to 184999570 102781 - protein coding gene MAP/microtubule affinity regulating kinase 1
Gm38251 1 184923136 to 184942500 19364 + antisense lncRNA gene predicted gene, 38251
D1Mit152 1 184939026 to 184939118 92 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 152