Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:182652549-183642563

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Radpf2 1 147249520 to 183092234 35842714 QTL radiation pulmonary fibrosis 2
D1Ertd86e 1 182672584 to 182673182 598 unclassified gene DNA segment, Chr 1, ERATO Doi 86, expressed
Tssr10566 1 182679931 to 182679943 12 + TSS region transcription start site region 10566
Gm37516 1 182679939 to 182681892 1953 + unclassified gene predicted gene, 37516
Gm37218 1 182687730 to 182688228 498 + lincRNA gene predicted gene, 37218
Ccdc185 1 182747126 to 182749180 2054 - protein coding gene coiled-coil domain containing 185
Cpgi1149 1 182747947 to 182748281 334 CpG island CpG island 1149
Cpgi1150 1 182748663 to 182749024 361 CpG island CpG island 1150
Tssr15625 1 182749175 to 182749189 14 - TSS region transcription start site region 15625
Cpgi1151 1 182763241 to 182765159 1918 CpG island CpG island 1151
Susd4 1 182763910 to 182896596 132686 + protein coding gene sushi domain containing 4
Tssr10567 1 182763961 to 182764014 53 + TSS region transcription start site region 10567
Tssr10568 1 182764194 to 182764316 122 + TSS region transcription start site region 10568
Tssr10569 1 182861168 to 182861171 3 + TSS region transcription start site region 10569
Gm37542 1 182907710 to 182910541 2831 + unclassified gene predicted gene, 37542
Cpgi1152 1 182954735 to 182955241 506 CpG island CpG island 1152
Tssr10570 1 182954770 to 182954828 58 + TSS region transcription start site region 10570
Tlr5 1 182954788 to 182976044 21256 + protein coding gene toll-like receptor 5
Tssr10571 1 182957641 to 182957650 9 + TSS region transcription start site region 10571
Tssr10572 1 182959114 to 182959123 9 + TSS region transcription start site region 10572
Cpgi1153 1 182960153 to 182960353 200 CpG island CpG island 1153
Tssr10573 1 182965472 to 182965476 4 + TSS region transcription start site region 10573
Gm38079 1 182976276 to 182976429 153 + lincRNA gene predicted gene, 38079
Cpgi1154 1 182983089 to 182983429 340 CpG island CpG island 1154
Gm33747 1 183054952 to 183065681 10729 - lncRNA gene predicted gene, 33747
Tssr332 1 183058631 to 183058648 17 - TSS region transcription start site region 332
Gm24975 1 183074606 to 183074706 100 + miRNA gene predicted gene, 24975
Disp1 1 183086266 to 183221522 135256 - protein coding gene dispatched RND transporter family member 1
D1Mit406 1 183092111 to 183092234 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 406
Hdlq15 1 183092111 to 183092234 123 QTL HDL QTL 15
Z7134 1 183112736 to 183112885 149 DNA segment DNA segment, Z7134
Tssr333 1 183147464 to 183147487 23 - TSS region transcription start site region 333
Tssr334 1 183147502 to 183147514 12 - TSS region transcription start site region 334
Tssr335 1 183147521 to 183147538 17 - TSS region transcription start site region 335
Tssr336 1 183147549 to 183147563 14 - TSS region transcription start site region 336
Tssr337 1 183154932 to 183154942 10 - TSS region transcription start site region 337
Tssr338 1 183194598 to 183194603 5 - TSS region transcription start site region 338
BC085271 1 183205071 to 183206557 1486 - pseudogene cDNA sequence BC085271
Tssr339 1 183221428 to 183221442 14 - TSS region transcription start site region 339
Tssr340 1 183221446 to 183221457 11 - TSS region transcription start site region 340
Tssr341 1 183221465 to 183221510 45 - TSS region transcription start site region 341
Tssr342 1 183221513 to 183221527 14 - TSS region transcription start site region 342
Gm34287 1 183254300 to 183275732 21432 - protein coding gene predicted gene, 34287
Brox 1 183276352 to 183297269 20917 - protein coding gene BRO1 domain and CAAX motif containing
Tssr343 1 183289840 to 183289850 10 + TSS region transcription start site region 343
Tssr344 1 183296944 to 183297015 71 - TSS region transcription start site region 344
Tssr345 1 183297029 to 183297073 44 + TSS region transcription start site region 345
Aida 1 183297060 to 183324501 27441 + protein coding gene axin interactor, dorsalization associated
Tssr346 1 183297265 to 183297305 40 - TSS region transcription start site region 346
Tssr347 1 183297307 to 183297323 16 + TSS region transcription start site region 347
Tssr348 1 183298329 to 183298332 3 - TSS region transcription start site region 348
Mia3 1 183326725 to 183369553 42828 - protein coding gene melanoma inhibitory activity 3
Tssr349 1 183345353 to 183345388 35 - TSS region transcription start site region 349
Gm34102 1 183345389 to 183349574 4185 + lncRNA gene predicted gene, 34102
Tssr350 1 183345400 to 183345423 23 - TSS region transcription start site region 350
Tssr351 1 183345432 to 183345487 55 - TSS region transcription start site region 351
Tssr352 1 183345541 to 183345554 13 + TSS region transcription start site region 352
Tssr353 1 183369526 to 183369563 37 - TSS region transcription start site region 353
Tssr354 1 183369797 to 183369818 21 + TSS region transcription start site region 354
Gm37339 1 183371076 to 183371467 391 + pseudogene predicted gene, 37339
Tssr355 1 183388953 to 183389013 60 + TSS region transcription start site region 355
Taf1a 1 183388981 to 183410198 21217 + protein coding gene TATA-box binding protein associated factor, RNA polymerase I, A
Gm37986 1 183414466 to 183414848 382 + lincRNA gene predicted gene, 37986
Hhipl2 1 183418215 to 183436808 18593 + protein coding gene hedgehog interacting protein-like 2
Tssr356 1 183418453 to 183418465 12 + TSS region transcription start site region 356
Tssr357 1 183418489 to 183418494 5 + TSS region transcription start site region 357
Tssr358 1 183418508 to 183418511 3 + TSS region transcription start site region 358
Tssr359 1 183418520 to 183418529 9 + TSS region transcription start site region 359
Tssr360 1 183420369 to 183420380 11 - TSS region transcription start site region 360
Tssr361 1 183420650 to 183420659 9 + TSS region transcription start site region 361
Gm37214 1 183420655 to 183422213 1558 + sense intronic lncRNA gene predicted gene, 37214
Tssr15626 1 183524356 to 183524361 5 - TSS region transcription start site region 15626
Ewc2 1 183561854 to 183561854 0 QTL ethanol withdrawal and consumption 2
Gm33973 1 183563512 to 183564045 533 + lincRNA gene predicted gene, 33973
Tssr10574 1 183600762 to 183600771 9 + TSS region transcription start site region 10574
Z7139 1 183626133 to 183626311 178 DNA segment DNA segment, Z7139
Tssr10575 1 183631439 to 183631450 11 + TSS region transcription start site region 10575
Gm39724 1 183631469 to 183665432 33963 + lncRNA gene predicted gene, 39724