Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:182265661-187356337

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429 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Radpf2 1 147249520 to 183092234 35842714 QTL radiation pulmonary fibrosis 2
Nba10 1 152919071 to 186706423 33787352 QTL New Zealand Black autoimmunity 10
Shali5 1 155706491 to 186261999 30555508 QTL survival time to hyperoxic acute lung injury 5
Emo1 1 163149528 to 186261999 23112471 QTL emotionality 1
Degs1 1 182275770 to 182282759 6989 - protein coding gene delta(4)-desaturase, sphingolipid 1
Tssr15611 1 182276492 to 182276509 17 - TSS region transcription start site region 15611
Cpgi1144 1 182282089 to 182283084 995 CpG island CpG island 1144
Tssr15612 1 182282218 to 182282239 21 - TSS region transcription start site region 15612
Tssr15613 1 182282738 to 182282807 69 - TSS region transcription start site region 15613
Tssr10546 1 182287925 to 182287969 44 + TSS region transcription start site region 10546
Tssr10547 1 182287972 to 182287998 26 + TSS region transcription start site region 10547
Tssr10548 1 182288011 to 182288027 16 + TSS region transcription start site region 10548
Tssr10549 1 182288037 to 182288054 17 + TSS region transcription start site region 10549
Tssr10550 1 182288081 to 182288118 37 + TSS region transcription start site region 10550
1700047M11Rik 1 182300834 to 182303289 2455 + lincRNA gene RIKEN cDNA 1700047M11 gene
Tssr10551 1 182300943 to 182300989 46 + TSS region transcription start site region 10551
Fbxo28 1 182313102 to 182341606 28504 - protein coding gene F-box protein 28
Cpgi1145 1 182340861 to 182341869 1008 CpG island CpG island 1145
Tssr15614 1 182341585 to 182341625 40 - TSS region transcription start site region 15614
Tssr10552 1 182341726 to 182341735 9 + TSS region transcription start site region 10552
Gm5706 1 182392543 to 182393535 992 - pseudogene predicted gene 5706
Tssr15615 1 182403187 to 182403206 19 - TSS region transcription start site region 15615
Gm10517 1 182408264 to 182409021 757 - protein coding gene predicted gene 10517
Cpgi1146 1 182408485 to 182409678 1193 CpG island CpG island 1146
Tssr10553 1 182409162 to 182409184 22 + TSS region transcription start site region 10553
Trp53bp2 1 182409172 to 182462432 53260 + protein coding gene transformation related protein 53 binding protein 2
Tssr10554 1 182409247 to 182409259 12 + TSS region transcription start site region 10554
D1Mit360 1 182422914 to 182423027 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 360
Aec2 1 182423027 to 52418578 -130004449 QTL autoimmune exocrinopathy 2
Tssr10555 1 182436308 to 182436311 3 + TSS region transcription start site region 10555
Tssr10556 1 182452708 to 182452718 10 + TSS region transcription start site region 10556
Tssr10557 1 182452724 to 182452745 21 + TSS region transcription start site region 10557
Tssr10558 1 182458601 to 182458612 11 + TSS region transcription start site region 10558
Tssr10559 1 182458645 to 182458656 11 + TSS region transcription start site region 10559
Capn2 1 182467259 to 182517483 50224 - protein coding gene calpain 2
Tssr15616 1 182468614 to 182468620 6 - TSS region transcription start site region 15616
Tssr10560 1 182472183 to 182472186 3 + TSS region transcription start site region 10560
Gm37885 1 182484179 to 182492473 8294 + antisense lncRNA gene predicted gene, 37885
Tssr10561 1 182484195 to 182484212 17 + TSS region transcription start site region 10561
Tssr10562 1 182484225 to 182484241 16 + TSS region transcription start site region 10562
Cpgi1147 1 182489818 to 182490072 254 CpG island CpG island 1147
Tssr10563 1 182490021 to 182490035 14 + TSS region transcription start site region 10563
Gm37069 1 182494156 to 182498297 4141 + unclassified gene predicted gene, 37069
Cpgi1148 1 182516824 to 182517866 1042 CpG island CpG island 1148
Tssr15617 1 182517355 to 182517364 9 - TSS region transcription start site region 15617
Tssr15618 1 182517368 to 182517399 31 - TSS region transcription start site region 15618
Tssr15619 1 182517419 to 182517424 5 - TSS region transcription start site region 15619
Tssr15620 1 182517447 to 182517525 78 - TSS region transcription start site region 15620
Tssr15621 1 182517552 to 182517563 11 - TSS region transcription start site region 15621
Tssr15622 1 182517564 to 182517615 51 - TSS region transcription start site region 15622
Tssr15623 1 182517616 to 182517627 11 - TSS region transcription start site region 15623
Tssr15624 1 182517740 to 182517774 34 - TSS region transcription start site region 15624
Tssr10564 1 182522412 to 182522415 3 + TSS region transcription start site region 10564
Gm8197 1 182546212 to 182547152 940 + pseudogene predicted gene 8197
Gm46081 1 182546371 to 182552656 6285 - pseudogene predicted gene, 46081
Gm46248 1 182560926 to 182564481 3555 + lncRNA gene predicted gene, 46248
Tssr10565 1 182564994 to 182565010 16 + TSS region transcription start site region 10565
Capn8 1 182565007 to 182632352 67345 + protein coding gene calpain 8
Tssr331 1 182565012 to 182565021 9 + TSS region transcription start site region 331
D1Ertd86e 1 182672584 to 182673182 598 unclassified gene DNA segment, Chr 1, ERATO Doi 86, expressed
Tssr10566 1 182679931 to 182679943 12 + TSS region transcription start site region 10566
Gm37516 1 182679939 to 182681892 1953 + unclassified gene predicted gene, 37516
Gm37218 1 182687730 to 182688228 498 + lincRNA gene predicted gene, 37218
Ccdc185 1 182747126 to 182749180 2054 - protein coding gene coiled-coil domain containing 185
Cpgi1149 1 182747947 to 182748281 334 CpG island CpG island 1149
Cpgi1150 1 182748663 to 182749024 361 CpG island CpG island 1150
Tssr15625 1 182749175 to 182749189 14 - TSS region transcription start site region 15625
Cpgi1151 1 182763241 to 182765159 1918 CpG island CpG island 1151
Susd4 1 182763910 to 182896596 132686 + protein coding gene sushi domain containing 4
Tssr10567 1 182763961 to 182764014 53 + TSS region transcription start site region 10567
Tssr10568 1 182764194 to 182764316 122 + TSS region transcription start site region 10568
Tssr10569 1 182861168 to 182861171 3 + TSS region transcription start site region 10569
Gm37542 1 182907710 to 182910541 2831 + unclassified gene predicted gene, 37542
Cpgi1152 1 182954735 to 182955241 506 CpG island CpG island 1152
Tssr10570 1 182954770 to 182954828 58 + TSS region transcription start site region 10570
Tlr5 1 182954788 to 182976044 21256 + protein coding gene toll-like receptor 5
Tssr10571 1 182957641 to 182957650 9 + TSS region transcription start site region 10571
Tssr10572 1 182959114 to 182959123 9 + TSS region transcription start site region 10572
Cpgi1153 1 182960153 to 182960353 200 CpG island CpG island 1153
Tssr10573 1 182965472 to 182965476 4 + TSS region transcription start site region 10573
Gm38079 1 182976276 to 182976429 153 + lincRNA gene predicted gene, 38079
Cpgi1154 1 182983089 to 182983429 340 CpG island CpG island 1154
Gm33747 1 183054952 to 183065681 10729 - lncRNA gene predicted gene, 33747
Tssr332 1 183058631 to 183058648 17 - TSS region transcription start site region 332
Gm24975 1 183074606 to 183074706 100 + miRNA gene predicted gene, 24975
Disp1 1 183086266 to 183221522 135256 - protein coding gene dispatched RND transporter family member 1
Hdlq15 1 183092111 to 183092234 123 QTL HDL QTL 15
D1Mit406 1 183092111 to 183092234 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 406
Z7134 1 183112736 to 183112885 149 DNA segment DNA segment, Z7134
Tssr333 1 183147464 to 183147487 23 - TSS region transcription start site region 333
Tssr334 1 183147502 to 183147514 12 - TSS region transcription start site region 334
Tssr335 1 183147521 to 183147538 17 - TSS region transcription start site region 335
Tssr336 1 183147549 to 183147563 14 - TSS region transcription start site region 336
Tssr337 1 183154932 to 183154942 10 - TSS region transcription start site region 337
Tssr338 1 183194598 to 183194603 5 - TSS region transcription start site region 338
BC085271 1 183205071 to 183206557 1486 - pseudogene cDNA sequence BC085271
Tssr339 1 183221428 to 183221442 14 - TSS region transcription start site region 339
Tssr340 1 183221446 to 183221457 11 - TSS region transcription start site region 340
Tssr341 1 183221465 to 183221510 45 - TSS region transcription start site region 341
Tssr342 1 183221513 to 183221527 14 - TSS region transcription start site region 342
Gm34287 1 183254300 to 183275732 21432 - protein coding gene predicted gene, 34287
Brox 1 183276352 to 183297269 20917 - protein coding gene BRO1 domain and CAAX motif containing
Tssr343 1 183289840 to 183289850 10 + TSS region transcription start site region 343
Tssr344 1 183296944 to 183297015 71 - TSS region transcription start site region 344
Tssr345 1 183297029 to 183297073 44 + TSS region transcription start site region 345
Aida 1 183297060 to 183324501 27441 + protein coding gene axin interactor, dorsalization associated
Tssr346 1 183297265 to 183297305 40 - TSS region transcription start site region 346
Tssr347 1 183297307 to 183297323 16 + TSS region transcription start site region 347
Tssr348 1 183298329 to 183298332 3 - TSS region transcription start site region 348
Mia3 1 183326725 to 183369553 42828 - protein coding gene melanoma inhibitory activity 3
Tssr349 1 183345353 to 183345388 35 - TSS region transcription start site region 349
Gm34102 1 183345389 to 183349574 4185 + lncRNA gene predicted gene, 34102
Tssr350 1 183345400 to 183345423 23 - TSS region transcription start site region 350
Tssr351 1 183345432 to 183345487 55 - TSS region transcription start site region 351
Tssr352 1 183345541 to 183345554 13 + TSS region transcription start site region 352
Tssr353 1 183369526 to 183369563 37 - TSS region transcription start site region 353
Tssr354 1 183369797 to 183369818 21 + TSS region transcription start site region 354
Gm37339 1 183371076 to 183371467 391 + pseudogene predicted gene, 37339
Tssr355 1 183388953 to 183389013 60 + TSS region transcription start site region 355
Taf1a 1 183388981 to 183410198 21217 + protein coding gene TATA-box binding protein associated factor, RNA polymerase I, A
Gm37986 1 183414466 to 183414848 382 + lincRNA gene predicted gene, 37986
Hhipl2 1 183418215 to 183436808 18593 + protein coding gene hedgehog interacting protein-like 2
Tssr356 1 183418453 to 183418465 12 + TSS region transcription start site region 356
Tssr357 1 183418489 to 183418494 5 + TSS region transcription start site region 357
Tssr358 1 183418508 to 183418511 3 + TSS region transcription start site region 358
Tssr359 1 183418520 to 183418529 9 + TSS region transcription start site region 359
Tssr360 1 183420369 to 183420380 11 - TSS region transcription start site region 360
Tssr361 1 183420650 to 183420659 9 + TSS region transcription start site region 361
Gm37214 1 183420655 to 183422213 1558 + sense intronic lncRNA gene predicted gene, 37214
Tssr15626 1 183524356 to 183524361 5 - TSS region transcription start site region 15626
Ewc2 1 183561854 to 183561854 0 QTL ethanol withdrawal and consumption 2
Gm33973 1 183563512 to 183564045 533 + lincRNA gene predicted gene, 33973
Tssr10574 1 183600762 to 183600771 9 + TSS region transcription start site region 10574
Z7139 1 183626133 to 183626311 178 DNA segment DNA segment, Z7139
Tssr10575 1 183631439 to 183631450 11 + TSS region transcription start site region 10575
Gm39724 1 183631469 to 183665432 33963 + lncRNA gene predicted gene, 39724
Gm8214 1 183681781 to 183682131 350 - pseudogene predicted gene 8214
Gm34068 1 183748977 to 183809746 60769 + lincRNA gene predicted gene, 34068
Gm38332 1 183918130 to 183918276 146 + pseudogene predicted gene, 38332
Gm38108 1 183928405 to 183929230 825 + lincRNA gene predicted gene, 38108
Gm34130 1 183937309 to 183945805 8496 + lncRNA gene predicted gene, 34130
Gm39725 1 184013315 to 184022470 9155 + lncRNA gene predicted gene, 39725
1700056E22Rik 1 184033032 to 184033998 966 - protein coding gene RIKEN cDNA 1700056E22 gene
Cpgi1155 1 184033276 to 184034616 1340 CpG island CpG island 1155
Tssr10576 1 184033672 to 184033685 13 + TSS region transcription start site region 10576
Tssr15627 1 184033714 to 184033721 7 - TSS region transcription start site region 15627
Tssr15628 1 184033767 to 184033781 14 - TSS region transcription start site region 15628
Tssr15629 1 184034002 to 184034016 14 - TSS region transcription start site region 15629
Tssr15630 1 184034125 to 184034144 19 - TSS region transcription start site region 15630
Tssr15631 1 184034148 to 184034186 38 - TSS region transcription start site region 15631
Tssr15632 1 184034257 to 184034268 11 - TSS region transcription start site region 15632
Tssr15633 1 184034296 to 184034308 12 - TSS region transcription start site region 15633
Tssr10577 1 184034375 to 184034386 11 + TSS region transcription start site region 10577
Tssr10578 1 184034426 to 184034437 11 + TSS region transcription start site region 10578
Tssr10579 1 184034453 to 184034473 20 + TSS region transcription start site region 10579
Dusp10 1 184034461 to 184075636 41175 + protein coding gene dual specificity phosphatase 10
Tssr10580 1 184039542 to 184039557 15 + TSS region transcription start site region 10580
Tssr10581 1 184118272 to 184118277 5 + TSS region transcription start site region 10581
Tssr362 1 184277117 to 184277124 7 - TSS region transcription start site region 362
Gm34177 1 184315136 to 184329389 14253 - lncRNA gene predicted gene, 34177
Tssr10582 1 184358323 to 184358344 21 + TSS region transcription start site region 10582
Gm37223 1 184358329 to 184394271 35942 + lincRNA gene predicted gene, 37223
Tssr10583 1 184372243 to 184372248 5 + TSS region transcription start site region 10583
Gm37712 1 184376344 to 184382441 6097 - lincRNA gene predicted gene, 37712
Gm34229 1 184428655 to 184432101 3446 - lncRNA gene predicted gene, 34229
2900092O11Rik 1 184442980 to 184443734 754 + unclassified gene RIKEN cDNA 2900092O11 gene
Tssr15634 1 184453376 to 184453390 14 - TSS region transcription start site region 15634
Tssr15635 1 184478123 to 184478162 39 - TSS region transcription start site region 15635
Tssr10584 1 184478262 to 184478271 9 + TSS region transcription start site region 10584
1700112H15Rik 1 184527841 to 184557691 29850 - lincRNA gene RIKEN cDNA 1700112H15 gene
Tssr10585 1 184536767 to 184536770 3 + TSS region transcription start site region 10585
Gm23349 1 184580109 to 184580206 97 - snRNA gene predicted gene, 23349
Gm37800 1 184610280 to 184629473 19193 - lincRNA gene predicted gene, 37800
Tssr15636 1 184612909 to 184612917 8 - TSS region transcription start site region 15636
D1Mit272 1 184613479 to 184613628 149 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 272
Rpl21-ps1 1 184617248 to 184617727 479 + pseudogene ribosomal protein 21, pseudogene 1
Tssr10586 1 184694960 to 184694968 8 + TSS region transcription start site region 10586
Gm38358 1 184695034 to 184695461 427 + pseudogene predicted gene, 38358
4930488B22Rik 1 184712497 to 184718989 6492 + lincRNA gene RIKEN cDNA 4930488B22 gene
Cpgi1156 1 184718338 to 184718827 489 CpG island CpG island 1156
Hlx 1 184727143 to 184732493 5350 - protein coding gene H2.0-like homeobox
Cpgi1157 1 184727398 to 184728149 751 CpG island CpG island 1157
Tssr10587 1 184728950 to 184728960 10 + TSS region transcription start site region 10587
Tssr10588 1 184729513 to 184729532 19 + TSS region transcription start site region 10588
Femwf7 1 184730317 to 184730461 144 QTL femur work to failure 7
Fembrs5 1 184730317 to 184730461 144 QTL femur breaking strength 5
D1Mit291 1 184730317 to 184730461 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 291
Zit1 1 184730317 to 184730461 144 QTL zinc induced tolerance 1
Cpgi1158 1 184731518 to 184733239 1721 CpG island CpG island 1158
Tssr15637 1 184731864 to 184731882 18 - TSS region transcription start site region 15637
Tssr15638 1 184731936 to 184731949 13 - TSS region transcription start site region 15638
Tssr15639 1 184732107 to 184732118 11 - TSS region transcription start site region 15639
Tssr15640 1 184732129 to 184732149 20 - TSS region transcription start site region 15640
Tssr15641 1 184732159 to 184732187 28 - TSS region transcription start site region 15641
Tssr15642 1 184732428 to 184732439 11 - TSS region transcription start site region 15642
Tssr15643 1 184732444 to 184732491 47 - TSS region transcription start site region 15643
Tssr15644 1 184732496 to 184732525 29 - TSS region transcription start site region 15644
Tssr15645 1 184732531 to 184732545 14 - TSS region transcription start site region 15645
Tssr15646 1 184732616 to 184732627 11 - TSS region transcription start site region 15646
Tssr15647 1 184732632 to 184732694 62 - TSS region transcription start site region 15647