Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:182154194-183374316

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Radpf2 1 147249520 to 183092234 35842714 QTL radiation pulmonary fibrosis 2
Vmn1r1 1 182157178 to 182158098 920 - protein coding gene vomeronasal 1 receptor 1
Tssr10541 1 182163306 to 182163324 18 + TSS region transcription start site region 10541
Tssr10542 1 182163337 to 182163342 5 + TSS region transcription start site region 10542
Tssr10543 1 182255309 to 182255341 32 + TSS region transcription start site region 10543
Tssr10544 1 182255349 to 182255359 10 + TSS region transcription start site region 10544
Tssr10545 1 182255423 to 182255451 28 + TSS region transcription start site region 10545
Gm33887 1 182260983 to 182264817 3834 + protein coding gene predicted gene, 33887
Degs1 1 182275770 to 182282759 6989 - protein coding gene delta(4)-desaturase, sphingolipid 1
Tssr15611 1 182276492 to 182276509 17 - TSS region transcription start site region 15611
Cpgi1144 1 182282089 to 182283084 995 CpG island CpG island 1144
Tssr15612 1 182282218 to 182282239 21 - TSS region transcription start site region 15612
Tssr15613 1 182282738 to 182282807 69 - TSS region transcription start site region 15613
Tssr10546 1 182287925 to 182287969 44 + TSS region transcription start site region 10546
Tssr10547 1 182287972 to 182287998 26 + TSS region transcription start site region 10547
Tssr10548 1 182288011 to 182288027 16 + TSS region transcription start site region 10548
Tssr10549 1 182288037 to 182288054 17 + TSS region transcription start site region 10549
Tssr10550 1 182288081 to 182288118 37 + TSS region transcription start site region 10550
1700047M11Rik 1 182300834 to 182303289 2455 + lincRNA gene RIKEN cDNA 1700047M11 gene
Tssr10551 1 182300943 to 182300989 46 + TSS region transcription start site region 10551
Fbxo28 1 182313102 to 182341606 28504 - protein coding gene F-box protein 28
Cpgi1145 1 182340861 to 182341869 1008 CpG island CpG island 1145
Tssr15614 1 182341585 to 182341625 40 - TSS region transcription start site region 15614
Tssr10552 1 182341726 to 182341735 9 + TSS region transcription start site region 10552
Gm5706 1 182392543 to 182393535 992 - pseudogene predicted gene 5706
Tssr15615 1 182403187 to 182403206 19 - TSS region transcription start site region 15615
Gm10517 1 182408264 to 182409021 757 - protein coding gene predicted gene 10517
Cpgi1146 1 182408485 to 182409678 1193 CpG island CpG island 1146
Tssr10553 1 182409162 to 182409184 22 + TSS region transcription start site region 10553
Trp53bp2 1 182409172 to 182462432 53260 + protein coding gene transformation related protein 53 binding protein 2
Tssr10554 1 182409247 to 182409259 12 + TSS region transcription start site region 10554
D1Mit360 1 182422914 to 182423027 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 360
Aec2 1 182423027 to 52418578 -130004449 QTL autoimmune exocrinopathy 2
Tssr10555 1 182436308 to 182436311 3 + TSS region transcription start site region 10555
Tssr10556 1 182452708 to 182452718 10 + TSS region transcription start site region 10556
Tssr10557 1 182452724 to 182452745 21 + TSS region transcription start site region 10557
Tssr10558 1 182458601 to 182458612 11 + TSS region transcription start site region 10558
Tssr10559 1 182458645 to 182458656 11 + TSS region transcription start site region 10559
Capn2 1 182467259 to 182517483 50224 - protein coding gene calpain 2
Tssr15616 1 182468614 to 182468620 6 - TSS region transcription start site region 15616
Tssr10560 1 182472183 to 182472186 3 + TSS region transcription start site region 10560
Gm37885 1 182484179 to 182492473 8294 + antisense lncRNA gene predicted gene, 37885
Tssr10561 1 182484195 to 182484212 17 + TSS region transcription start site region 10561
Tssr10562 1 182484225 to 182484241 16 + TSS region transcription start site region 10562
Cpgi1147 1 182489818 to 182490072 254 CpG island CpG island 1147
Tssr10563 1 182490021 to 182490035 14 + TSS region transcription start site region 10563
Gm37069 1 182494156 to 182498297 4141 + unclassified gene predicted gene, 37069
Cpgi1148 1 182516824 to 182517866 1042 CpG island CpG island 1148
Tssr15617 1 182517355 to 182517364 9 - TSS region transcription start site region 15617
Tssr15618 1 182517368 to 182517399 31 - TSS region transcription start site region 15618
Tssr15619 1 182517419 to 182517424 5 - TSS region transcription start site region 15619
Tssr15620 1 182517447 to 182517525 78 - TSS region transcription start site region 15620
Tssr15621 1 182517552 to 182517563 11 - TSS region transcription start site region 15621
Tssr15622 1 182517564 to 182517615 51 - TSS region transcription start site region 15622
Tssr15623 1 182517616 to 182517627 11 - TSS region transcription start site region 15623
Tssr15624 1 182517740 to 182517774 34 - TSS region transcription start site region 15624
Tssr10564 1 182522412 to 182522415 3 + TSS region transcription start site region 10564
Gm8197 1 182546212 to 182547152 940 + pseudogene predicted gene 8197
Gm46081 1 182546371 to 182552656 6285 - pseudogene predicted gene, 46081
Gm46248 1 182560926 to 182564481 3555 + lncRNA gene predicted gene, 46248
Tssr10565 1 182564994 to 182565010 16 + TSS region transcription start site region 10565
Capn8 1 182565007 to 182632352 67345 + protein coding gene calpain 8
Tssr331 1 182565012 to 182565021 9 + TSS region transcription start site region 331
D1Ertd86e 1 182672584 to 182673182 598 unclassified gene DNA segment, Chr 1, ERATO Doi 86, expressed
Tssr10566 1 182679931 to 182679943 12 + TSS region transcription start site region 10566
Gm37516 1 182679939 to 182681892 1953 + unclassified gene predicted gene, 37516
Gm37218 1 182687730 to 182688228 498 + lincRNA gene predicted gene, 37218
Ccdc185 1 182747126 to 182749180 2054 - protein coding gene coiled-coil domain containing 185
Cpgi1149 1 182747947 to 182748281 334 CpG island CpG island 1149
Cpgi1150 1 182748663 to 182749024 361 CpG island CpG island 1150
Tssr15625 1 182749175 to 182749189 14 - TSS region transcription start site region 15625
Cpgi1151 1 182763241 to 182765159 1918 CpG island CpG island 1151
Susd4 1 182763910 to 182896596 132686 + protein coding gene sushi domain containing 4
Tssr10567 1 182763961 to 182764014 53 + TSS region transcription start site region 10567
Tssr10568 1 182764194 to 182764316 122 + TSS region transcription start site region 10568
Tssr10569 1 182861168 to 182861171 3 + TSS region transcription start site region 10569
Gm37542 1 182907710 to 182910541 2831 + unclassified gene predicted gene, 37542
Cpgi1152 1 182954735 to 182955241 506 CpG island CpG island 1152
Tssr10570 1 182954770 to 182954828 58 + TSS region transcription start site region 10570
Tlr5 1 182954788 to 182976044 21256 + protein coding gene toll-like receptor 5
Tssr10571 1 182957641 to 182957650 9 + TSS region transcription start site region 10571
Tssr10572 1 182959114 to 182959123 9 + TSS region transcription start site region 10572
Cpgi1153 1 182960153 to 182960353 200 CpG island CpG island 1153
Tssr10573 1 182965472 to 182965476 4 + TSS region transcription start site region 10573
Gm38079 1 182976276 to 182976429 153 + lincRNA gene predicted gene, 38079
Cpgi1154 1 182983089 to 182983429 340 CpG island CpG island 1154
Gm33747 1 183054952 to 183065681 10729 - lncRNA gene predicted gene, 33747
Tssr332 1 183058631 to 183058648 17 - TSS region transcription start site region 332
Gm24975 1 183074606 to 183074706 100 + miRNA gene predicted gene, 24975
Disp1 1 183086266 to 183221522 135256 - protein coding gene dispatched RND transporter family member 1
Hdlq15 1 183092111 to 183092234 123 QTL HDL QTL 15
D1Mit406 1 183092111 to 183092234 123 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 406
Z7134 1 183112736 to 183112885 149 DNA segment DNA segment, Z7134
Tssr333 1 183147464 to 183147487 23 - TSS region transcription start site region 333
Tssr334 1 183147502 to 183147514 12 - TSS region transcription start site region 334
Tssr335 1 183147521 to 183147538 17 - TSS region transcription start site region 335
Tssr336 1 183147549 to 183147563 14 - TSS region transcription start site region 336
Tssr337 1 183154932 to 183154942 10 - TSS region transcription start site region 337
Tssr338 1 183194598 to 183194603 5 - TSS region transcription start site region 338
BC085271 1 183205071 to 183206557 1486 - pseudogene cDNA sequence BC085271
Tssr339 1 183221428 to 183221442 14 - TSS region transcription start site region 339
Tssr340 1 183221446 to 183221457 11 - TSS region transcription start site region 340
Tssr341 1 183221465 to 183221510 45 - TSS region transcription start site region 341
Tssr342 1 183221513 to 183221527 14 - TSS region transcription start site region 342
Gm34287 1 183254300 to 183275732 21432 - protein coding gene predicted gene, 34287
Brox 1 183276352 to 183297269 20917 - protein coding gene BRO1 domain and CAAX motif containing
Tssr343 1 183289840 to 183289850 10 + TSS region transcription start site region 343
Tssr344 1 183296944 to 183297015 71 - TSS region transcription start site region 344
Tssr345 1 183297029 to 183297073 44 + TSS region transcription start site region 345
Aida 1 183297060 to 183324501 27441 + protein coding gene axin interactor, dorsalization associated
Tssr346 1 183297265 to 183297305 40 - TSS region transcription start site region 346
Tssr347 1 183297307 to 183297323 16 + TSS region transcription start site region 347
Tssr348 1 183298329 to 183298332 3 - TSS region transcription start site region 348
Mia3 1 183326725 to 183369553 42828 - protein coding gene melanoma inhibitory activity 3
Tssr349 1 183345353 to 183345388 35 - TSS region transcription start site region 349
Gm34102 1 183345389 to 183349574 4185 + lncRNA gene predicted gene, 34102
Tssr350 1 183345400 to 183345423 23 - TSS region transcription start site region 350
Tssr351 1 183345432 to 183345487 55 - TSS region transcription start site region 351
Tssr352 1 183345541 to 183345554 13 + TSS region transcription start site region 352
Tssr353 1 183369526 to 183369563 37 - TSS region transcription start site region 353
Tssr354 1 183369797 to 183369818 21 + TSS region transcription start site region 354
Gm37339 1 183371076 to 183371467 391 + pseudogene predicted gene, 37339