Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:181844802-182404818

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr15592 1 181845274 to 181845302 28 - TSS region transcription start site region 15592
Gm5533 1 181851574 to 181853189 1615 - lincRNA gene predicted gene 5533
Tssr15593 1 181853143 to 181853152 9 - TSS region transcription start site region 15593
Tssr15594 1 181853183 to 181853193 10 - TSS region transcription start site region 15594
Tssr10533 1 181853268 to 181853279 11 + TSS region transcription start site region 10533
Tssr10534 1 181853760 to 181853784 24 + TSS region transcription start site region 10534
Tssr15595 1 181860708 to 181860752 44 - TSS region transcription start site region 15595
Tssr10535 1 181860889 to 181860898 9 + TSS region transcription start site region 10535
Tssr15596 1 181865654 to 181865670 16 - TSS region transcription start site region 15596
Tssr10536 1 181877360 to 181877368 8 + TSS region transcription start site region 10536
Gm33669 1 181878013 to 181886711 8698 + lncRNA gene predicted gene, 33669
Cpgi1139 1 181881533 to 181881739 206 CpG island CpG island 1139
D1Mit37 1 181885493 to 181885613 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 37
Enah 1 181896384 to 182019980 123596 - protein coding gene ENAH actin regulator
Tssr15597 1 181901492 to 181901497 5 - TSS region transcription start site region 15597
Tssr15598 1 181917224 to 181917243 19 - TSS region transcription start site region 15598
Tssr15599 1 181918479 to 181918508 29 - TSS region transcription start site region 15599
Cpgi1140 1 181923412 to 181923772 360 CpG island CpG island 1140
Tssr15600 1 181927757 to 181927763 6 - TSS region transcription start site region 15600
Tssr15601 1 181929062 to 181929067 5 - TSS region transcription start site region 15601
Tssr15602 1 181937200 to 181937212 12 - TSS region transcription start site region 15602
Tssr15603 1 181937215 to 181937238 23 - TSS region transcription start site region 15603
2700078F05Rik 1 181950132 to 181953375 3243 - unclassified gene RIKEN cDNA 2700078F05 gene
Tssr15604 1 181956532 to 181956547 15 - TSS region transcription start site region 15604
Gm38359 1 181967699 to 181969923 2224 - unclassified gene predicted gene, 38359
Gm37018 1 181986336 to 181990204 3868 - unclassified gene predicted gene, 37018
Gm37258 1 182006060 to 182007686 1626 - unclassified gene predicted gene, 37258
Tssr15605 1 182014457 to 182014479 22 - TSS region transcription start site region 15605
Tssr15606 1 182014489 to 182014498 9 - TSS region transcription start site region 15606
Cpgi1141 1 182019010 to 182020857 1847 CpG island CpG island 1141
Tssr15607 1 182019927 to 182019989 62 - TSS region transcription start site region 15607
Tssr15608 1 182019997 to 182020004 7 - TSS region transcription start site region 15608
Tssr15609 1 182020124 to 182020149 25 - TSS region transcription start site region 15609
Tssr15610 1 182020257 to 182020291 34 - TSS region transcription start site region 15610
Gm38648 1 182044353 to 182051008 6655 + lncRNA gene predicted gene, 38648
D1Mit458 1 182049733 to 182049832 99 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 458
n-TSgct1 1 182056008 to 182056089 81 + tRNA gene nuclear encoded tRNA serine 1 (anticodon GCT)
Gm37177 1 182071403 to 182071819 416 + pseudogene predicted gene, 37177
Gm39719 1 182096317 to 182113641 17324 + lncRNA gene predicted gene, 39719
Gm33725 1 182108213 to 182124682 16469 - lncRNA gene predicted gene, 33725
Cpgi1142 1 182113183 to 182113383 200 CpG island CpG island 1142
Cpgi1143 1 182124491 to 182125355 864 CpG island CpG island 1143
Tssr10537 1 182124638 to 182124649 11 + TSS region transcription start site region 10537
Srp9 1 182124737 to 182132407 7670 + protein coding gene signal recognition particle 9
Tssr10538 1 182124774 to 182124800 26 + TSS region transcription start site region 10538
Tssr10539 1 182124802 to 182124818 16 + TSS region transcription start site region 10539
Tssr10540 1 182125391 to 182125395 4 + TSS region transcription start site region 10540
Gm17968 1 182127406 to 182128189 783 - pseudogene predicted gene, 17968
Vmn1r1 1 182157178 to 182158098 920 - protein coding gene vomeronasal 1 receptor 1
Tssr10541 1 182163306 to 182163324 18 + TSS region transcription start site region 10541
Tssr10542 1 182163337 to 182163342 5 + TSS region transcription start site region 10542
Tssr10543 1 182255309 to 182255341 32 + TSS region transcription start site region 10543
Tssr10544 1 182255349 to 182255359 10 + TSS region transcription start site region 10544
Tssr10545 1 182255423 to 182255451 28 + TSS region transcription start site region 10545
Gm33887 1 182260983 to 182264817 3834 + protein coding gene predicted gene, 33887
Degs1 1 182275770 to 182282759 6989 - protein coding gene delta(4)-desaturase, sphingolipid 1
Tssr15611 1 182276492 to 182276509 17 - TSS region transcription start site region 15611
Cpgi1144 1 182282089 to 182283084 995 CpG island CpG island 1144
Tssr15612 1 182282218 to 182282239 21 - TSS region transcription start site region 15612
Tssr15613 1 182282738 to 182282807 69 - TSS region transcription start site region 15613
Tssr10546 1 182287925 to 182287969 44 + TSS region transcription start site region 10546
Tssr10547 1 182287972 to 182287998 26 + TSS region transcription start site region 10547
Tssr10548 1 182288011 to 182288027 16 + TSS region transcription start site region 10548
Tssr10549 1 182288037 to 182288054 17 + TSS region transcription start site region 10549
Tssr10550 1 182288081 to 182288118 37 + TSS region transcription start site region 10550
1700047M11Rik 1 182300834 to 182303289 2455 + lincRNA gene RIKEN cDNA 1700047M11 gene
Tssr10551 1 182300943 to 182300989 46 + TSS region transcription start site region 10551
Fbxo28 1 182313102 to 182341606 28504 - protein coding gene F-box protein 28
Cpgi1145 1 182340861 to 182341869 1008 CpG island CpG island 1145
Tssr15614 1 182341585 to 182341625 40 - TSS region transcription start site region 15614
Tssr10552 1 182341726 to 182341735 9 + TSS region transcription start site region 10552
Gm5706 1 182392543 to 182393535 992 - pseudogene predicted gene 5706
Tssr15615 1 182403187 to 182403206 19 - TSS region transcription start site region 15615