Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:181281573-181871578

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq13 1 173004198 to 181573094 8568896 QTL circadian period of locomotor activity 13
Hpic2 1 175641251 to 181573094 5931843 QTL haloperidol induced catalepsy 2
Tssr328 1 181282034 to 181282040 6 + TSS region transcription start site region 328
Gm8146 1 181282046 to 181283892 1846 + pseudogene predicted gene 8146
Tssr329 1 181285698 to 181285712 14 + TSS region transcription start site region 329
Tssr10520 1 181285795 to 181285828 33 + TSS region transcription start site region 10520
Gm39718 1 181287173 to 181288556 1383 + lncRNA gene predicted gene, 39718
Gm39717 1 181293596 to 181296612 3016 + lncRNA gene predicted gene, 39717
D1Mit542 1 181324127 to 181324251 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 542
Cpgi1135 1 181352077 to 181353789 1712 CpG island CpG island 1135
Tssr10521 1 181352469 to 181352491 22 + TSS region transcription start site region 10521
Tssr10522 1 181352618 to 181352641 23 + TSS region transcription start site region 10522
Cnih3 1 181352628 to 181460641 108013 + protein coding gene cornichon family AMPA receptor auxiliary protein 3
Tssr10523 1 181352649 to 181352664 15 + TSS region transcription start site region 10523
Tssr10524 1 181352681 to 181352693 12 + TSS region transcription start site region 10524
2900069G24Rik 1 181381178 to 181382488 1310 + unclassified gene RIKEN cDNA 2900069G24 gene
Gm16547 1 181400464 to 181400756 292 - pseudogene predicted gene 16547
Tssr10525 1 181428135 to 181428141 6 + TSS region transcription start site region 10525
Gm16539 1 181431723 to 181432400 677 - pseudogene predicted gene 16539
Tssr330 1 181446266 to 181446267 1 - TSS region transcription start site region 330
Ccdc121 1 181509633 to 181511451 1818 - protein coding gene coiled-coil domain containing 121
Cpgi1136 1 181510380 to 181510864 484 CpG island CpG island 1136
Gm32767 1 181534996 to 181540014 5018 - lncRNA gene predicted gene, 32767
Cpgi1137 1 181545387 to 181545610 223 CpG island CpG island 1137
D1Mit273 1 181572949 to 181573094 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 273
Tssr10526 1 181576573 to 181576578 5 + TSS region transcription start site region 10526
Tssr10527 1 181576585 to 181576616 31 + TSS region transcription start site region 10527
Tssr10528 1 181576618 to 181576632 14 + TSS region transcription start site region 10528
Tssr10529 1 181576644 to 181576649 5 + TSS region transcription start site region 10529
Dnah14 1 181589974 to 181814741 224767 + protein coding gene dynein, axonemal, heavy chain 14
Gm33612 1 181620634 to 181627235 6601 - lncRNA gene predicted gene, 33612
Gm37664 1 181686430 to 181690242 3812 - unclassified gene predicted gene, 37664
Tssr10530 1 181804098 to 181804113 15 + TSS region transcription start site region 10530
Gm23690 1 181813607 to 181813700 93 - snRNA gene predicted gene, 23690
Lbr 1 181815315 to 181842401 27086 - protein coding gene lamin B receptor
Tssr15584 1 181816592 to 181816594 2 - TSS region transcription start site region 15584
Tssr15585 1 181820645 to 181820647 2 - TSS region transcription start site region 15585
Tssr15586 1 181834553 to 181834569 16 - TSS region transcription start site region 15586
Tssr15587 1 181838018 to 181838046 28 - TSS region transcription start site region 15587
Gm26004 1 181840453 to 181840568 115 - rRNA gene predicted gene, 26004
Tssr15588 1 181841013 to 181841020 7 - TSS region transcription start site region 15588
Cpgi1138 1 181841492 to 181843214 1722 CpG island CpG island 1138
Tssr15589 1 181842307 to 181842313 6 - TSS region transcription start site region 15589
Tssr15590 1 181842334 to 181842384 50 - TSS region transcription start site region 15590
Tssr10531 1 181842515 to 181842548 33 + TSS region transcription start site region 10531
Tssr10532 1 181842551 to 181842565 14 + TSS region transcription start site region 10532
Tssr15591 1 181843034 to 181843050 16 - TSS region transcription start site region 15591
Tssr15592 1 181845274 to 181845302 28 - TSS region transcription start site region 15592
Gm5533 1 181851574 to 181853189 1615 - lincRNA gene predicted gene 5533
Tssr15593 1 181853143 to 181853152 9 - TSS region transcription start site region 15593
Tssr15594 1 181853183 to 181853193 10 - TSS region transcription start site region 15594
Tssr10533 1 181853268 to 181853279 11 + TSS region transcription start site region 10533
Tssr10534 1 181853760 to 181853784 24 + TSS region transcription start site region 10534
Tssr15595 1 181860708 to 181860752 44 - TSS region transcription start site region 15595
Tssr10535 1 181860889 to 181860898 9 + TSS region transcription start site region 10535
Tssr15596 1 181865654 to 181865670 16 - TSS region transcription start site region 15596