Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:181246723-181617400

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq13 1 173004198 to 181573094 8568896 QTL circadian period of locomotor activity 13
Hpic2 1 175641251 to 181573094 5931843 QTL haloperidol induced catalepsy 2
Tssr10519 1 181251269 to 181251282 13 + TSS region transcription start site region 10519
Tssr15581 1 181255305 to 181255310 5 - TSS region transcription start site region 15581
Cpgi1133 1 181256521 to 181256963 442 CpG island CpG island 1133
Tssr15582 1 181257139 to 181257163 24 - TSS region transcription start site region 15582
Tssr15583 1 181257661 to 181257674 13 - TSS region transcription start site region 15583
Cpgi1134 1 181272863 to 181273184 321 CpG island CpG island 1134
Tssr328 1 181282034 to 181282040 6 + TSS region transcription start site region 328
Gm8146 1 181282046 to 181283892 1846 + pseudogene predicted gene 8146
Tssr329 1 181285698 to 181285712 14 + TSS region transcription start site region 329
Tssr10520 1 181285795 to 181285828 33 + TSS region transcription start site region 10520
Gm39718 1 181287173 to 181288556 1383 + lncRNA gene predicted gene, 39718
Gm39717 1 181293596 to 181296612 3016 + lncRNA gene predicted gene, 39717
D1Mit542 1 181324127 to 181324251 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 542
Cpgi1135 1 181352077 to 181353789 1712 CpG island CpG island 1135
Tssr10521 1 181352469 to 181352491 22 + TSS region transcription start site region 10521
Tssr10522 1 181352618 to 181352641 23 + TSS region transcription start site region 10522
Cnih3 1 181352628 to 181460641 108013 + protein coding gene cornichon family AMPA receptor auxiliary protein 3
Tssr10523 1 181352649 to 181352664 15 + TSS region transcription start site region 10523
Tssr10524 1 181352681 to 181352693 12 + TSS region transcription start site region 10524
2900069G24Rik 1 181381178 to 181382488 1310 + unclassified gene RIKEN cDNA 2900069G24 gene
Gm16547 1 181400464 to 181400756 292 - pseudogene predicted gene 16547
Tssr10525 1 181428135 to 181428141 6 + TSS region transcription start site region 10525
Gm16539 1 181431723 to 181432400 677 - pseudogene predicted gene 16539
Tssr330 1 181446266 to 181446267 1 - TSS region transcription start site region 330
Ccdc121 1 181509633 to 181511451 1818 - protein coding gene coiled-coil domain containing 121
Cpgi1136 1 181510380 to 181510864 484 CpG island CpG island 1136
Gm32767 1 181534996 to 181540014 5018 - lncRNA gene predicted gene, 32767
Cpgi1137 1 181545387 to 181545610 223 CpG island CpG island 1137
D1Mit273 1 181572949 to 181573094 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 273
Tssr10526 1 181576573 to 181576578 5 + TSS region transcription start site region 10526
Tssr10527 1 181576585 to 181576616 31 + TSS region transcription start site region 10527
Tssr10528 1 181576618 to 181576632 14 + TSS region transcription start site region 10528
Tssr10529 1 181576644 to 181576649 5 + TSS region transcription start site region 10529
Dnah14 1 181589974 to 181814741 224767 + protein coding gene dynein, axonemal, heavy chain 14