Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:180854293-180958088

33 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Sde2	1	180851151 to 180868113	16962	+	protein coding gene	SDE2 telomere maintenance homolog (S. pombe)
Gm20305	1	180854282 to 180854458	176	-	pseudogene	predicted gene, 20305
Gm18036	1	180874878 to 180875326	448	+	pseudogene	predicted gene, 18036
Gm39714	1	180875512 to 180885858	10346	-	lncRNA gene	predicted gene, 39714
Tssr15555	1	180885490 to 180885520	30	-	TSS region	transcription start site region 15555
Tssr15556	1	180885551 to 180885601	50	-	TSS region	transcription start site region 15556
Tssr10499	1	180893107 to 180893108	1	+	TSS region	transcription start site region 10499
Lefty2	1	180893108 to 180899103	5995	+	protein coding gene	left-right determination factor 2
Cpgi1124	1	180894314 to 180894968	654		CpG island	CpG island 1124
Tssr15557	1	180894413 to 180894436	23	-	TSS region	transcription start site region 15557
Cpgi1125	1	180903853 to 180904880	1027		CpG island	CpG island 1125
Tssr10500	1	180904278 to 180904343	65	+	TSS region	transcription start site region 10500
Pycr2	1	180904293 to 180908088	3795	+	protein coding gene	pyrroline-5-carboxylate reductase family, member 2
Tssr10501	1	180904740 to 180904783	43	+	TSS region	transcription start site region 10501
Tssr15558	1	180906893 to 180906900	7	-	TSS region	transcription start site region 15558
Gm32199	1	180912117 to 180914468	2351	+	lncRNA gene	predicted gene, 32199
Gm39715	1	180920413 to 180936671	16258	-	lncRNA gene	predicted gene, 39715
Tssr10502	1	180935037 to 180935041	4	+	TSS region	transcription start site region 10502
Lefty1	1	180935039 to 180938401	3362	+	protein coding gene	left right determination factor 1
Cpgi1126	1	180936722 to 180937364	642		CpG island	CpG island 1126
Cpgi1127	1	180941811 to 180943212	1401		CpG island	CpG island 1127
Tssr10503	1	180942325 to 180942352	27	+	TSS region	transcription start site region 10503
Tmem63a	1	180942344 to 180975112	32768	+	protein coding gene	transmembrane protein 63a
Tssr10504	1	180942359 to 180942368	9	+	TSS region	transcription start site region 10504
Tssr10505	1	180942434 to 180942445	11	+	TSS region	transcription start site region 10505
Tssr10506	1	180942452 to 180942477	25	+	TSS region	transcription start site region 10506
Tssr10507	1	180942500 to 180942529	29	+	TSS region	transcription start site region 10507
Cpgi1128	1	180943381 to 180943623	242		CpG island	CpG island 1128
Tssr324	1	180944057 to 180944071	14	+	TSS region	transcription start site region 324
Tssr10508	1	180945898 to 180945925	27	+	TSS region	transcription start site region 10508
Tssr15559	1	180947583 to 180947584	1	-	TSS region	transcription start site region 15559
2210411M09Rik	1	180952064 to 180958149	6085	-	antisense lncRNA gene	RIKEN cDNA 2210411M09 gene
Tssr10509	1	180952677 to 180952685	8	+	TSS region	transcription start site region 10509