Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:180835898-181055925

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr10492 1 180848305 to 180848337 32 + TSS region transcription start site region 10492
Tssr15552 1 180848649 to 180848658 9 - TSS region transcription start site region 15552
Tssr321 1 180848677 to 180848688 11 - TSS region transcription start site region 321
Tssr322 1 180848695 to 180848711 16 - TSS region transcription start site region 322
Tssr15553 1 180848924 to 180848939 15 - TSS region transcription start site region 15553
Tssr10493 1 180849132 to 180849144 12 + TSS region transcription start site region 10493
Tssr10494 1 180849159 to 180849170 11 + TSS region transcription start site region 10494
Tssr323 1 180849182 to 180849192 10 + TSS region transcription start site region 323
Tssr10495 1 180849220 to 180849228 8 + TSS region transcription start site region 10495
Cpgi1123 1 180850425 to 180851467 1042 CpG island CpG island 1123
Tssr15554 1 180850860 to 180850864 4 - TSS region transcription start site region 15554
Tssr10496 1 180851087 to 180851110 23 + TSS region transcription start site region 10496
Tssr10497 1 180851113 to 180851130 17 + TSS region transcription start site region 10497
Tssr10498 1 180851131 to 180851172 41 + TSS region transcription start site region 10498
Sde2 1 180851151 to 180868113 16962 + protein coding gene SDE2 telomere maintenance homolog (S. pombe)
Gm20305 1 180854282 to 180854458 176 - pseudogene predicted gene, 20305
Gm18036 1 180874878 to 180875326 448 + pseudogene predicted gene, 18036
Gm39714 1 180875512 to 180885858 10346 - lncRNA gene predicted gene, 39714
Tssr15555 1 180885490 to 180885520 30 - TSS region transcription start site region 15555
Tssr15556 1 180885551 to 180885601 50 - TSS region transcription start site region 15556
Tssr10499 1 180893107 to 180893108 1 + TSS region transcription start site region 10499
Lefty2 1 180893108 to 180899103 5995 + protein coding gene left-right determination factor 2
Cpgi1124 1 180894314 to 180894968 654 CpG island CpG island 1124
Tssr15557 1 180894413 to 180894436 23 - TSS region transcription start site region 15557
Cpgi1125 1 180903853 to 180904880 1027 CpG island CpG island 1125
Tssr10500 1 180904278 to 180904343 65 + TSS region transcription start site region 10500
Pycr2 1 180904293 to 180908088 3795 + protein coding gene pyrroline-5-carboxylate reductase family, member 2
Tssr10501 1 180904740 to 180904783 43 + TSS region transcription start site region 10501
Tssr15558 1 180906893 to 180906900 7 - TSS region transcription start site region 15558
Gm32199 1 180912117 to 180914468 2351 + lncRNA gene predicted gene, 32199
Gm39715 1 180920413 to 180936671 16258 - lncRNA gene predicted gene, 39715
Tssr10502 1 180935037 to 180935041 4 + TSS region transcription start site region 10502
Lefty1 1 180935039 to 180938401 3362 + protein coding gene left right determination factor 1
Cpgi1126 1 180936722 to 180937364 642 CpG island CpG island 1126
Cpgi1127 1 180941811 to 180943212 1401 CpG island CpG island 1127
Tssr10503 1 180942325 to 180942352 27 + TSS region transcription start site region 10503
Tmem63a 1 180942344 to 180975112 32768 + protein coding gene transmembrane protein 63a
Tssr10504 1 180942359 to 180942368 9 + TSS region transcription start site region 10504
Tssr10505 1 180942434 to 180942445 11 + TSS region transcription start site region 10505
Tssr10506 1 180942452 to 180942477 25 + TSS region transcription start site region 10506
Tssr10507 1 180942500 to 180942529 29 + TSS region transcription start site region 10507
Cpgi1128 1 180943381 to 180943623 242 CpG island CpG island 1128
Tssr324 1 180944057 to 180944071 14 + TSS region transcription start site region 324
Tssr10508 1 180945898 to 180945925 27 + TSS region transcription start site region 10508
Tssr15559 1 180947583 to 180947584 1 - TSS region transcription start site region 15559
2210411M09Rik 1 180952064 to 180958149 6085 - antisense lncRNA gene RIKEN cDNA 2210411M09 gene
Tssr10509 1 180952677 to 180952685 8 + TSS region transcription start site region 10509
Gm36961 1 180976158 to 180976289 131 - pseudogene predicted gene, 36961
Ephx1 1 180989556 to 181017569 28013 - protein coding gene epoxide hydrolase 1, microsomal
Tssr15560 1 180989851 to 180989862 11 - TSS region transcription start site region 15560
Tssr15561 1 180994025 to 180994035 10 - TSS region transcription start site region 15561
Tssr15562 1 180996093 to 180996104 11 - TSS region transcription start site region 15562
Tssr15563 1 180996145 to 180996155 10 - TSS region transcription start site region 15563
Tssr15564 1 180999845 to 180999860 15 - TSS region transcription start site region 15564
Tssr15565 1 181001899 to 181001917 18 - TSS region transcription start site region 15565
Tssr15566 1 181001939 to 181001973 34 - TSS region transcription start site region 15566
Aaj1 1 181004752 to 192168463 11163711 QTL anxiety in A/J 1
D1Mit151 1 181004752 to 181004865 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 151
Axtq1 1 181004752 to 192168463 11163711 QTL anxiety QTL 1
Cpgi1129 1 181017196 to 181017546 350 CpG island CpG island 1129
Tssr15567 1 181017489 to 181017548 59 - TSS region transcription start site region 15567
Gm37431 1 181022663 to 181022773 110 - pseudogene predicted gene, 37431
Gm37086 1 181026278 to 181029729 3451 + unclassified gene predicted gene, 37086
Tssr10510 1 181035594 to 181035643 49 + TSS region transcription start site region 10510
Gm39716 1 181047133 to 181078853 31720 - lncRNA gene predicted gene, 39716
Tssr10511 1 181051232 to 181051242 10 + TSS region transcription start site region 10511
9130409I23Rik 1 181051237 to 181060667 9430 + protein coding gene RIKEN cDNA 9130409I23 gene
Tssr10512 1 181051249 to 181051266 17 + TSS region transcription start site region 10512
Gm17967 1 181052528 to 181053174 646 - pseudogene predicted gene, 17967