Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:180835490-180935520

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr10492 1 180848305 to 180848337 32 + TSS region transcription start site region 10492
Tssr15552 1 180848649 to 180848658 9 - TSS region transcription start site region 15552
Tssr321 1 180848677 to 180848688 11 - TSS region transcription start site region 321
Tssr322 1 180848695 to 180848711 16 - TSS region transcription start site region 322
Tssr15553 1 180848924 to 180848939 15 - TSS region transcription start site region 15553
Tssr10493 1 180849132 to 180849144 12 + TSS region transcription start site region 10493
Tssr10494 1 180849159 to 180849170 11 + TSS region transcription start site region 10494
Tssr323 1 180849182 to 180849192 10 + TSS region transcription start site region 323
Tssr10495 1 180849220 to 180849228 8 + TSS region transcription start site region 10495
Cpgi1123 1 180850425 to 180851467 1042 CpG island CpG island 1123
Tssr15554 1 180850860 to 180850864 4 - TSS region transcription start site region 15554
Tssr10496 1 180851087 to 180851110 23 + TSS region transcription start site region 10496
Tssr10497 1 180851113 to 180851130 17 + TSS region transcription start site region 10497
Tssr10498 1 180851131 to 180851172 41 + TSS region transcription start site region 10498
Sde2 1 180851151 to 180868113 16962 + protein coding gene SDE2 telomere maintenance homolog (S. pombe)
Gm20305 1 180854282 to 180854458 176 - pseudogene predicted gene, 20305
Gm18036 1 180874878 to 180875326 448 + pseudogene predicted gene, 18036
Gm39714 1 180875512 to 180885858 10346 - lncRNA gene predicted gene, 39714
Tssr15555 1 180885490 to 180885520 30 - TSS region transcription start site region 15555
Tssr15556 1 180885551 to 180885601 50 - TSS region transcription start site region 15556
Tssr10499 1 180893107 to 180893108 1 + TSS region transcription start site region 10499
Lefty2 1 180893108 to 180899103 5995 + protein coding gene left-right determination factor 2
Cpgi1124 1 180894314 to 180894968 654 CpG island CpG island 1124
Tssr15557 1 180894413 to 180894436 23 - TSS region transcription start site region 15557
Cpgi1125 1 180903853 to 180904880 1027 CpG island CpG island 1125
Tssr10500 1 180904278 to 180904343 65 + TSS region transcription start site region 10500
Pycr2 1 180904293 to 180908088 3795 + protein coding gene pyrroline-5-carboxylate reductase family, member 2
Tssr10501 1 180904740 to 180904783 43 + TSS region transcription start site region 10501
Tssr15558 1 180906893 to 180906900 7 - TSS region transcription start site region 15558
Gm32199 1 180912117 to 180914468 2351 + lncRNA gene predicted gene, 32199
Gm39715 1 180920413 to 180936671 16258 - lncRNA gene predicted gene, 39715
Tssr10502 1 180935037 to 180935041 4 + TSS region transcription start site region 10502
Lefty1 1 180935039 to 180938401 3362 + protein coding gene left right determination factor 1