Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:180752568-180859483

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acbd3 1 180726043 to 180754204 28161 + protein coding gene acyl-Coenzyme A binding domain containing 3
Gm37768 1 180743210 to 180755836 12626 - antisense lncRNA gene predicted gene, 37768
5830405M20Rik 1 180755837 to 180758887 3050 unclassified non-coding RNA gene RIKEN cDNA 5830405M20 gene
Gm38293 1 180763497 to 180768656 5159 - lincRNA gene predicted gene, 38293
Cpgi1117 1 180763663 to 180763876 213 CpG island CpG island 1117
Cpgi1118 1 180768227 to 180768776 549 CpG island CpG island 1118
Cpgi1119 1 180777503 to 180778656 1153 CpG island CpG island 1119
2900024J01Rik 1 180777970 to 180792160 14190 + lncRNA gene RIKEN cDNA 2900024J01 gene
Cpgi1120 1 180794049 to 180794613 564 CpG island CpG island 1120
D1Mit509 1 180796342 to 180796455 113 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 509
H3f3a 1 180802560 to 180813605 11045 - protein coding gene H3 histone, family 3A
Gm17275 1 180802568 to 180809483 6915 + lincRNA gene predicted gene, 17275
Tssr15545 1 180808241 to 180808246 5 - TSS region transcription start site region 15545
Tssr15546 1 180808673 to 180808676 3 - TSS region transcription start site region 15546
Tssr15547 1 180812328 to 180812332 4 - TSS region transcription start site region 15547
Cpgi1121 1 180812497 to 180814652 2155 CpG island CpG island 1121
Tssr15548 1 180813549 to 180813583 34 - TSS region transcription start site region 15548
Tssr15549 1 180813591 to 180813605 14 - TSS region transcription start site region 15549
G370120E05Rik 1 180813672 to 180833655 19983 + lncRNA gene RIKEN cDNA G370120E05 gene
H3f3aos 1 180813776 to 180816859 3083 + antisense lncRNA gene H3 histone, family 3A, opposite strand
Tssr15550 1 180813865 to 180813882 17 - TSS region transcription start site region 15550
Tssr15551 1 180829882 to 180829892 10 - TSS region transcription start site region 15551
Cpgi1122 1 180830329 to 180830490 161 CpG island CpG island 1122
Gm24836 1 180832769 to 180832876 107 + snRNA gene predicted gene, 24836
Tssr10492 1 180848305 to 180848337 32 + TSS region transcription start site region 10492
Tssr15552 1 180848649 to 180848658 9 - TSS region transcription start site region 15552
Tssr321 1 180848677 to 180848688 11 - TSS region transcription start site region 321
Tssr322 1 180848695 to 180848711 16 - TSS region transcription start site region 322
Tssr15553 1 180848924 to 180848939 15 - TSS region transcription start site region 15553
Tssr10493 1 180849132 to 180849144 12 + TSS region transcription start site region 10493
Tssr10494 1 180849159 to 180849170 11 + TSS region transcription start site region 10494
Tssr323 1 180849182 to 180849192 10 + TSS region transcription start site region 323
Tssr10495 1 180849220 to 180849228 8 + TSS region transcription start site region 10495
Cpgi1123 1 180850425 to 180851467 1042 CpG island CpG island 1123
Tssr15554 1 180850860 to 180850864 4 - TSS region transcription start site region 15554
Tssr10496 1 180851087 to 180851110 23 + TSS region transcription start site region 10496
Tssr10497 1 180851113 to 180851130 17 + TSS region transcription start site region 10497
Tssr10498 1 180851131 to 180851172 41 + TSS region transcription start site region 10498
Sde2 1 180851151 to 180868113 16962 + protein coding gene SDE2 telomere maintenance homolog (S. pombe)
Gm20305 1 180854282 to 180854458 176 - pseudogene predicted gene, 20305