Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:180713497-180818656

33 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm8101	1	180721614 to 180722091	477	+	pseudogene	predicted gene 8101
Cpgi1116	1	180725499 to 180726661	1162		CpG island	CpG island 1116
Tssr10483	1	180726005 to 180726017	12	+	TSS region	transcription start site region 10483
Tssr10484	1	180726019 to 180726106	87	+	TSS region	transcription start site region 10484
Acbd3	1	180726043 to 180754204	28161	+	protein coding gene	acyl-Coenzyme A binding domain containing 3
Tssr10485	1	180726324 to 180726351	27	+	TSS region	transcription start site region 10485
Tssr10486	1	180727273 to 180727286	13	+	TSS region	transcription start site region 10486
Tssr10487	1	180731838 to 180731844	6	+	TSS region	transcription start site region 10487
Tssr10488	1	180733166 to 180733190	24	+	TSS region	transcription start site region 10488
Tssr15544	1	180734430 to 180734441	11	-	TSS region	transcription start site region 15544
Gm37768	1	180743210 to 180755836	12626	-	antisense lncRNA gene	predicted gene, 37768
Tssr10489	1	180748915 to 180748923	8	+	TSS region	transcription start site region 10489
Tssr10490	1	180749811 to 180749823	12	+	TSS region	transcription start site region 10490
Tssr10491	1	180749907 to 180749931	24	+	TSS region	transcription start site region 10491
5830405M20Rik	1	180755837 to 180758887	3050		unclassified non-coding RNA gene	RIKEN cDNA 5830405M20 gene
Gm38293	1	180763497 to 180768656	5159	-	lincRNA gene	predicted gene, 38293
Cpgi1117	1	180763663 to 180763876	213		CpG island	CpG island 1117
Cpgi1118	1	180768227 to 180768776	549		CpG island	CpG island 1118
Cpgi1119	1	180777503 to 180778656	1153		CpG island	CpG island 1119
2900024J01Rik	1	180777970 to 180792160	14190	+	lncRNA gene	RIKEN cDNA 2900024J01 gene
Cpgi1120	1	180794049 to 180794613	564		CpG island	CpG island 1120
D1Mit509	1	180796342 to 180796455	113		DNA segment	DNA Segment, Chr 1 Massachusetts Institute of Technology 509
H3f3a	1	180802560 to 180813605	11045	-	protein coding gene	H3 histone, family 3A
Gm17275	1	180802568 to 180809483	6915	+	lincRNA gene	predicted gene, 17275
Tssr15545	1	180808241 to 180808246	5	-	TSS region	transcription start site region 15545
Tssr15546	1	180808673 to 180808676	3	-	TSS region	transcription start site region 15546
Tssr15547	1	180812328 to 180812332	4	-	TSS region	transcription start site region 15547
Cpgi1121	1	180812497 to 180814652	2155		CpG island	CpG island 1121
Tssr15548	1	180813549 to 180813583	34	-	TSS region	transcription start site region 15548
Tssr15549	1	180813591 to 180813605	14	-	TSS region	transcription start site region 15549
G370120E05Rik	1	180813672 to 180833655	19983	+	lncRNA gene	RIKEN cDNA G370120E05 gene
H3f3aos	1	180813776 to 180816859	3083	+	antisense lncRNA gene	H3 histone, family 3A, opposite strand
Tssr15550	1	180813865 to 180813882	17	-	TSS region	transcription start site region 15550