Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:180645634-182602235

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307 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq13 1 173004198 to 181573094 8568896 QTL circadian period of locomotor activity 13
Hpic2 1 175641251 to 181573094 5931843 QTL haloperidol induced catalepsy 2
Lin9 1 180641150 to 180690687 49537 + protein coding gene lin-9 homolog (C. elegans)
Mixl1 1 180693043 to 180697034 3991 - protein coding gene Mix1 homeobox-like 1 (Xenopus laevis)
Tssr15542 1 180694082 to 180694083 1 - TSS region transcription start site region 15542
Cpgi1115 1 180696463 to 180697598 1135 CpG island CpG island 1115
Tssr15543 1 180697022 to 180697028 6 - TSS region transcription start site region 15543
Gm8101 1 180721614 to 180722091 477 + pseudogene predicted gene 8101
Cpgi1116 1 180725499 to 180726661 1162 CpG island CpG island 1116
Tssr10483 1 180726005 to 180726017 12 + TSS region transcription start site region 10483
Tssr10484 1 180726019 to 180726106 87 + TSS region transcription start site region 10484
Acbd3 1 180726043 to 180754204 28161 + protein coding gene acyl-Coenzyme A binding domain containing 3
Tssr10485 1 180726324 to 180726351 27 + TSS region transcription start site region 10485
Tssr10486 1 180727273 to 180727286 13 + TSS region transcription start site region 10486
Tssr10487 1 180731838 to 180731844 6 + TSS region transcription start site region 10487
Tssr10488 1 180733166 to 180733190 24 + TSS region transcription start site region 10488
Tssr15544 1 180734430 to 180734441 11 - TSS region transcription start site region 15544
Gm37768 1 180743210 to 180755836 12626 - antisense lncRNA gene predicted gene, 37768
Tssr10489 1 180748915 to 180748923 8 + TSS region transcription start site region 10489
Tssr10490 1 180749811 to 180749823 12 + TSS region transcription start site region 10490
Tssr10491 1 180749907 to 180749931 24 + TSS region transcription start site region 10491
5830405M20Rik 1 180755837 to 180758887 3050 unclassified non-coding RNA gene RIKEN cDNA 5830405M20 gene
Gm38293 1 180763497 to 180768656 5159 - lincRNA gene predicted gene, 38293
Cpgi1117 1 180763663 to 180763876 213 CpG island CpG island 1117
Cpgi1118 1 180768227 to 180768776 549 CpG island CpG island 1118
Cpgi1119 1 180777503 to 180778656 1153 CpG island CpG island 1119
2900024J01Rik 1 180777970 to 180792160 14190 + lncRNA gene RIKEN cDNA 2900024J01 gene
Cpgi1120 1 180794049 to 180794613 564 CpG island CpG island 1120
D1Mit509 1 180796342 to 180796455 113 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 509
H3f3a 1 180802560 to 180813605 11045 - protein coding gene H3 histone, family 3A
Gm17275 1 180802568 to 180809483 6915 + lincRNA gene predicted gene, 17275
Tssr15545 1 180808241 to 180808246 5 - TSS region transcription start site region 15545
Tssr15546 1 180808673 to 180808676 3 - TSS region transcription start site region 15546
Tssr15547 1 180812328 to 180812332 4 - TSS region transcription start site region 15547
Cpgi1121 1 180812497 to 180814652 2155 CpG island CpG island 1121
Tssr15548 1 180813549 to 180813583 34 - TSS region transcription start site region 15548
Tssr15549 1 180813591 to 180813605 14 - TSS region transcription start site region 15549
G370120E05Rik 1 180813672 to 180833655 19983 + lncRNA gene RIKEN cDNA G370120E05 gene
H3f3aos 1 180813776 to 180816859 3083 + antisense lncRNA gene H3 histone, family 3A, opposite strand
Tssr15550 1 180813865 to 180813882 17 - TSS region transcription start site region 15550
Tssr15551 1 180829882 to 180829892 10 - TSS region transcription start site region 15551
Cpgi1122 1 180830329 to 180830490 161 CpG island CpG island 1122
Gm24836 1 180832769 to 180832876 107 + snRNA gene predicted gene, 24836
Tssr10492 1 180848305 to 180848337 32 + TSS region transcription start site region 10492
Tssr15552 1 180848649 to 180848658 9 - TSS region transcription start site region 15552
Tssr321 1 180848677 to 180848688 11 - TSS region transcription start site region 321
Tssr322 1 180848695 to 180848711 16 - TSS region transcription start site region 322
Tssr15553 1 180848924 to 180848939 15 - TSS region transcription start site region 15553
Tssr10493 1 180849132 to 180849144 12 + TSS region transcription start site region 10493
Tssr10494 1 180849159 to 180849170 11 + TSS region transcription start site region 10494
Tssr323 1 180849182 to 180849192 10 + TSS region transcription start site region 323
Tssr10495 1 180849220 to 180849228 8 + TSS region transcription start site region 10495
Cpgi1123 1 180850425 to 180851467 1042 CpG island CpG island 1123
Tssr15554 1 180850860 to 180850864 4 - TSS region transcription start site region 15554
Tssr10496 1 180851087 to 180851110 23 + TSS region transcription start site region 10496
Tssr10497 1 180851113 to 180851130 17 + TSS region transcription start site region 10497
Tssr10498 1 180851131 to 180851172 41 + TSS region transcription start site region 10498
Sde2 1 180851151 to 180868113 16962 + protein coding gene SDE2 telomere maintenance homolog (S. pombe)
Gm20305 1 180854282 to 180854458 176 - pseudogene predicted gene, 20305
Gm18036 1 180874878 to 180875326 448 + pseudogene predicted gene, 18036
Gm39714 1 180875512 to 180885858 10346 - lncRNA gene predicted gene, 39714
Tssr15555 1 180885490 to 180885520 30 - TSS region transcription start site region 15555
Tssr15556 1 180885551 to 180885601 50 - TSS region transcription start site region 15556
Tssr10499 1 180893107 to 180893108 1 + TSS region transcription start site region 10499
Lefty2 1 180893108 to 180899103 5995 + protein coding gene left-right determination factor 2
Cpgi1124 1 180894314 to 180894968 654 CpG island CpG island 1124
Tssr15557 1 180894413 to 180894436 23 - TSS region transcription start site region 15557
Cpgi1125 1 180903853 to 180904880 1027 CpG island CpG island 1125
Tssr10500 1 180904278 to 180904343 65 + TSS region transcription start site region 10500
Pycr2 1 180904293 to 180908088 3795 + protein coding gene pyrroline-5-carboxylate reductase family, member 2
Tssr10501 1 180904740 to 180904783 43 + TSS region transcription start site region 10501
Tssr15558 1 180906893 to 180906900 7 - TSS region transcription start site region 15558
Gm32199 1 180912117 to 180914468 2351 + lncRNA gene predicted gene, 32199
Gm39715 1 180920413 to 180936671 16258 - lncRNA gene predicted gene, 39715
Tssr10502 1 180935037 to 180935041 4 + TSS region transcription start site region 10502
Lefty1 1 180935039 to 180938401 3362 + protein coding gene left right determination factor 1
Cpgi1126 1 180936722 to 180937364 642 CpG island CpG island 1126
Cpgi1127 1 180941811 to 180943212 1401 CpG island CpG island 1127
Tssr10503 1 180942325 to 180942352 27 + TSS region transcription start site region 10503
Tmem63a 1 180942344 to 180975112 32768 + protein coding gene transmembrane protein 63a
Tssr10504 1 180942359 to 180942368 9 + TSS region transcription start site region 10504
Tssr10505 1 180942434 to 180942445 11 + TSS region transcription start site region 10505
Tssr10506 1 180942452 to 180942477 25 + TSS region transcription start site region 10506
Tssr10507 1 180942500 to 180942529 29 + TSS region transcription start site region 10507
Cpgi1128 1 180943381 to 180943623 242 CpG island CpG island 1128
Tssr324 1 180944057 to 180944071 14 + TSS region transcription start site region 324
Tssr10508 1 180945898 to 180945925 27 + TSS region transcription start site region 10508
Tssr15559 1 180947583 to 180947584 1 - TSS region transcription start site region 15559
2210411M09Rik 1 180952064 to 180958149 6085 - antisense lncRNA gene RIKEN cDNA 2210411M09 gene
Tssr10509 1 180952677 to 180952685 8 + TSS region transcription start site region 10509
Gm36961 1 180976158 to 180976289 131 - pseudogene predicted gene, 36961
Ephx1 1 180989556 to 181017569 28013 - protein coding gene epoxide hydrolase 1, microsomal
Tssr15560 1 180989851 to 180989862 11 - TSS region transcription start site region 15560
Tssr15561 1 180994025 to 180994035 10 - TSS region transcription start site region 15561
Tssr15562 1 180996093 to 180996104 11 - TSS region transcription start site region 15562
Tssr15563 1 180996145 to 180996155 10 - TSS region transcription start site region 15563
Tssr15564 1 180999845 to 180999860 15 - TSS region transcription start site region 15564
Tssr15565 1 181001899 to 181001917 18 - TSS region transcription start site region 15565
Tssr15566 1 181001939 to 181001973 34 - TSS region transcription start site region 15566
Aaj1 1 181004752 to 192168463 11163711 QTL anxiety in A/J 1
D1Mit151 1 181004752 to 181004865 113 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 151
Axtq1 1 181004752 to 192168463 11163711 QTL anxiety QTL 1
Cpgi1129 1 181017196 to 181017546 350 CpG island CpG island 1129
Tssr15567 1 181017489 to 181017548 59 - TSS region transcription start site region 15567
Gm37431 1 181022663 to 181022773 110 - pseudogene predicted gene, 37431
Gm37086 1 181026278 to 181029729 3451 + unclassified gene predicted gene, 37086
Tssr10510 1 181035594 to 181035643 49 + TSS region transcription start site region 10510
Gm39716 1 181047133 to 181078853 31720 - lncRNA gene predicted gene, 39716
Tssr10511 1 181051232 to 181051242 10 + TSS region transcription start site region 10511
9130409I23Rik 1 181051237 to 181060667 9430 + protein coding gene RIKEN cDNA 9130409I23 gene
Tssr10512 1 181051249 to 181051266 17 + TSS region transcription start site region 10512
Gm17967 1 181052528 to 181053174 646 - pseudogene predicted gene, 17967
Tssr10513 1 181062058 to 181062075 17 + TSS region transcription start site region 10513
Gm37406 1 181062070 to 181064475 2405 + lincRNA gene predicted gene, 37406
Gm6606 1 181074183 to 181076640 2457 + pseudogene predicted gene 6606
Nvl 1 181087138 to 181144204 57066 - protein coding gene nuclear VCP-like
Fgfr3-ps 1 181091129 to 181092265 1136 + pseudogene fibroblast growth factor receptor 3, pseudogene
Tssr15568 1 181093745 to 181093749 4 - TSS region transcription start site region 15568
Tssr15569 1 181093782 to 181093795 13 - TSS region transcription start site region 15569
Tssr15570 1 181101571 to 181101595 24 - TSS region transcription start site region 15570
Cpgi1130 1 181143786 to 181144697 911 CpG island CpG island 1130
Tssr15571 1 181144133 to 181144183 50 - TSS region transcription start site region 15571
Tssr15572 1 181144198 to 181144209 11 - TSS region transcription start site region 15572
Tssr10514 1 181144226 to 181144246 20 + TSS region transcription start site region 10514
Tssr325 1 181144248 to 181144275 27 + TSS region transcription start site region 325
Tssr10515 1 181144427 to 181144457 30 + TSS region transcription start site region 10515
Cnih4 1 181150345 to 181168994 18649 + protein coding gene cornichon family AMPA receptor auxiliary protein 4
Cpgi1131 1 181150777 to 181151473 696 CpG island CpG island 1131
Tssr10516 1 181150926 to 181150984 58 + TSS region transcription start site region 10516
Tssr326 1 181151005 to 181151016 11 + TSS region transcription start site region 326
Wdr26 1 181173228 to 181211552 38324 - protein coding gene WD repeat domain 26
Tssr15573 1 181174555 to 181174566 11 - TSS region transcription start site region 15573
Cpgi1132 1 181210741 to 181212635 1894 CpG island CpG island 1132
Tssr10517 1 181210825 to 181210832 7 + TSS region transcription start site region 10517
Tssr15574 1 181211172 to 181211196 24 - TSS region transcription start site region 15574
Tssr15575 1 181211716 to 181211796 80 - TSS region transcription start site region 15575
Tssr15576 1 181211944 to 181211968 24 - TSS region transcription start site region 15576
Gm38664 1 181211962 to 181236369 24407 + protein coding gene predicted gene, 38664
Tssr15577 1 181211971 to 181212000 29 - TSS region transcription start site region 15577
Tssr15578 1 181212007 to 181212012 5 - TSS region transcription start site region 15578
Tssr10518 1 181212019 to 181212047 28 + TSS region transcription start site region 10518
Tssr15579 1 181212351 to 181212375 24 - TSS region transcription start site region 15579
A430110L20Rik 1 181226082 to 181228498 2416 + lincRNA gene RIKEN cDNA A430110L20 gene
Tssr327 1 181232367 to 181232390 23 - TSS region transcription start site region 327
Tssr15580 1 181234419 to 181234459 40 - TSS region transcription start site region 15580
Rpl35a-ps2 1 181241988 to 181242320 332 - pseudogene ribosomal protein L35A, pseudogene 2
Tssr10519 1 181251269 to 181251282 13 + TSS region transcription start site region 10519
Tssr15581 1 181255305 to 181255310 5 - TSS region transcription start site region 15581
Cpgi1133 1 181256521 to 181256963 442 CpG island CpG island 1133
Tssr15582 1 181257139 to 181257163 24 - TSS region transcription start site region 15582
Tssr15583 1 181257661 to 181257674 13 - TSS region transcription start site region 15583
Cpgi1134 1 181272863 to 181273184 321 CpG island CpG island 1134
Tssr328 1 181282034 to 181282040 6 + TSS region transcription start site region 328
Gm8146 1 181282046 to 181283892 1846 + pseudogene predicted gene 8146
Tssr329 1 181285698 to 181285712 14 + TSS region transcription start site region 329
Tssr10520 1 181285795 to 181285828 33 + TSS region transcription start site region 10520
Gm39718 1 181287173 to 181288556 1383 + lncRNA gene predicted gene, 39718
Gm39717 1 181293596 to 181296612 3016 + lncRNA gene predicted gene, 39717
D1Mit542 1 181324127 to 181324251 124 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 542
Cpgi1135 1 181352077 to 181353789 1712 CpG island CpG island 1135
Tssr10521 1 181352469 to 181352491 22 + TSS region transcription start site region 10521
Tssr10522 1 181352618 to 181352641 23 + TSS region transcription start site region 10522
Cnih3 1 181352628 to 181460641 108013 + protein coding gene cornichon family AMPA receptor auxiliary protein 3
Tssr10523 1 181352649 to 181352664 15 + TSS region transcription start site region 10523
Tssr10524 1 181352681 to 181352693 12 + TSS region transcription start site region 10524
2900069G24Rik 1 181381178 to 181382488 1310 + unclassified gene RIKEN cDNA 2900069G24 gene
Gm16547 1 181400464 to 181400756 292 - pseudogene predicted gene 16547
Tssr10525 1 181428135 to 181428141 6 + TSS region transcription start site region 10525
Gm16539 1 181431723 to 181432400 677 - pseudogene predicted gene 16539
Tssr330 1 181446266 to 181446267 1 - TSS region transcription start site region 330
Ccdc121 1 181509633 to 181511451 1818 - protein coding gene coiled-coil domain containing 121
Cpgi1136 1 181510380 to 181510864 484 CpG island CpG island 1136
Gm32767 1 181534996 to 181540014 5018 - lncRNA gene predicted gene, 32767
Cpgi1137 1 181545387 to 181545610 223 CpG island CpG island 1137
D1Mit273 1 181572949 to 181573094 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 273
Tssr10526 1 181576573 to 181576578 5 + TSS region transcription start site region 10526
Tssr10527 1 181576585 to 181576616 31 + TSS region transcription start site region 10527
Tssr10528 1 181576618 to 181576632 14 + TSS region transcription start site region 10528
Tssr10529 1 181576644 to 181576649 5 + TSS region transcription start site region 10529
Dnah14 1 181589974 to 181814741 224767 + protein coding gene dynein, axonemal, heavy chain 14
Gm33612 1 181620634 to 181627235 6601 - lncRNA gene predicted gene, 33612
Gm37664 1 181686430 to 181690242 3812 - unclassified gene predicted gene, 37664
Tssr10530 1 181804098 to 181804113 15 + TSS region transcription start site region 10530
Gm23690 1 181813607 to 181813700 93 - snRNA gene predicted gene, 23690
Lbr 1 181815315 to 181842401 27086 - protein coding gene lamin B receptor
Tssr15584 1 181816592 to 181816594 2 - TSS region transcription start site region 15584
Tssr15585 1 181820645 to 181820647 2 - TSS region transcription start site region 15585
Tssr15586 1 181834553 to 181834569 16 - TSS region transcription start site region 15586
Tssr15587 1 181838018 to 181838046 28 - TSS region transcription start site region 15587
Gm26004 1 181840453 to 181840568 115 - rRNA gene predicted gene, 26004
Tssr15588 1 181841013 to 181841020 7 - TSS region transcription start site region 15588
Cpgi1138 1 181841492 to 181843214 1722 CpG island CpG island 1138
Tssr15589 1 181842307 to 181842313 6 - TSS region transcription start site region 15589
Tssr15590 1 181842334 to 181842384 50 - TSS region transcription start site region 15590
Tssr10531 1 181842515 to 181842548 33 + TSS region transcription start site region 10531
Tssr10532 1 181842551 to 181842565 14 + TSS region transcription start site region 10532
Tssr15591 1 181843034 to 181843050 16 - TSS region transcription start site region 15591
Tssr15592 1 181845274 to 181845302 28 - TSS region transcription start site region 15592
Gm5533 1 181851574 to 181853189 1615 - lincRNA gene predicted gene 5533
Tssr15593 1 181853143 to 181853152 9 - TSS region transcription start site region 15593