Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:180378257-180818272

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itpkb 1 180330485 to 180424802 94317 + protein coding gene inositol 1,4,5-trisphosphate 3-kinase B
Gm36933 1 180376444 to 180379514 3070 + unclassified gene predicted gene, 36933
Tssr10460 1 180382205 to 180382228 23 + TSS region transcription start site region 10460
Tssr10461 1 180382305 to 180382334 29 + TSS region transcription start site region 10461
Tssr10462 1 180382351 to 180382363 12 + TSS region transcription start site region 10462
Tssr10463 1 180382373 to 180382400 27 + TSS region transcription start site region 10463
Cpgi1108 1 180387467 to 180387805 338 CpG island CpG island 1108
Tssr15537 1 180387476 to 180387490 14 - TSS region transcription start site region 15537
Tssr10464 1 180387742 to 180387772 30 + TSS region transcription start site region 10464
Tssr10465 1 180387999 to 180388004 5 + TSS region transcription start site region 10465
Tssr15538 1 180393032 to 180393072 40 - TSS region transcription start site region 15538
Tssr10466 1 180393344 to 180393348 4 + TSS region transcription start site region 10466
Gm39712 1 180397791 to 180405372 7581 - lncRNA gene predicted gene, 39712
Tssr10467 1 180402041 to 180402063 22 + TSS region transcription start site region 10467
Cpgi1109 1 180403660 to 180404018 358 CpG island CpG island 1109
Tssr15539 1 180403743 to 180403748 5 - TSS region transcription start site region 15539
Tssr10468 1 180419484 to 180419497 13 + TSS region transcription start site region 10468
Tssr10469 1 180421032 to 180421042 10 + TSS region transcription start site region 10469
Tssr10470 1 180421046 to 180421063 17 + TSS region transcription start site region 10470
Cpgi1110 1 180421748 to 180421947 199 CpG island CpG island 1110
Tssr10471 1 180423440 to 180423466 26 + TSS region transcription start site region 10471
Tssr10472 1 180432148 to 180432172 24 + TSS region transcription start site region 10472
Stum 1 180432387 to 180483504 51117 - protein coding gene mechanosensory transduction mediator
Gm37984 1 180473355 to 180477087 3732 - unclassified gene predicted gene, 37984
Cpgi1111 1 180482681 to 180483773 1092 CpG island CpG island 1111
Tssr15540 1 180483410 to 180483485 75 - TSS region transcription start site region 15540
Cpgi1112 1 180483892 to 180484359 467 CpG island CpG island 1112
Gm37267 1 180508778 to 180519727 10949 - lincRNA gene predicted gene, 37267
Gm31986 1 180531425 to 180568795 37370 - lncRNA gene predicted gene, 31986
Tssr10473 1 180541565 to 180541615 50 + TSS region transcription start site region 10473
Cpgi1113 1 180568685 to 180569502 817 CpG island CpG island 1113
Tssr10474 1 180568913 to 180568960 47 + TSS region transcription start site region 10474
Tssr10475 1 180568964 to 180569010 46 + TSS region transcription start site region 10475
Parp1 1 180568975 to 180601254 32279 + protein coding gene poly (ADP-ribose) polymerase family, member 1
Tssr10476 1 180579290 to 180579310 20 + TSS region transcription start site region 10476
Tssr15541 1 180580610 to 180580629 19 - TSS region transcription start site region 15541
Tssr10477 1 180583808 to 180583823 15 + TSS region transcription start site region 10477
Mir6904 1 180587201 to 180587267 66 + miRNA gene microRNA 6904
Tssr10478 1 180587980 to 180588023 43 + TSS region transcription start site region 10478
Tssr10479 1 180598240 to 180598254 14 + TSS region transcription start site region 10479
Tssr10480 1 180598257 to 180598272 15 + TSS region transcription start site region 10480
Cpgi1114 1 180640546 to 180642100 1554 CpG island CpG island 1114
Tssr10481 1 180640691 to 180640706 15 + TSS region transcription start site region 10481
Lin9 1 180641150 to 180690687 49537 + protein coding gene lin-9 homolog (C. elegans)
Tssr10482 1 180641330 to 180641374 44 + TSS region transcription start site region 10482
Mixl1 1 180693043 to 180697034 3991 - protein coding gene Mix1 homeobox-like 1 (Xenopus laevis)
Tssr15542 1 180694082 to 180694083 1 - TSS region transcription start site region 15542
Cpgi1115 1 180696463 to 180697598 1135 CpG island CpG island 1115
Tssr15543 1 180697022 to 180697028 6 - TSS region transcription start site region 15543
Gm8101 1 180721614 to 180722091 477 + pseudogene predicted gene 8101
Cpgi1116 1 180725499 to 180726661 1162 CpG island CpG island 1116
Tssr10483 1 180726005 to 180726017 12 + TSS region transcription start site region 10483
Tssr10484 1 180726019 to 180726106 87 + TSS region transcription start site region 10484
Acbd3 1 180726043 to 180754204 28161 + protein coding gene acyl-Coenzyme A binding domain containing 3
Tssr10485 1 180726324 to 180726351 27 + TSS region transcription start site region 10485
Tssr10486 1 180727273 to 180727286 13 + TSS region transcription start site region 10486
Tssr10487 1 180731838 to 180731844 6 + TSS region transcription start site region 10487
Tssr10488 1 180733166 to 180733190 24 + TSS region transcription start site region 10488
Tssr15544 1 180734430 to 180734441 11 - TSS region transcription start site region 15544
Gm37768 1 180743210 to 180755836 12626 - antisense lncRNA gene predicted gene, 37768
Tssr10489 1 180748915 to 180748923 8 + TSS region transcription start site region 10489
Tssr10490 1 180749811 to 180749823 12 + TSS region transcription start site region 10490
Tssr10491 1 180749907 to 180749931 24 + TSS region transcription start site region 10491
5830405M20Rik 1 180755837 to 180758887 3050 unclassified non-coding RNA gene RIKEN cDNA 5830405M20 gene
Gm38293 1 180763497 to 180768656 5159 - lincRNA gene predicted gene, 38293
Cpgi1117 1 180763663 to 180763876 213 CpG island CpG island 1117
Cpgi1118 1 180768227 to 180768776 549 CpG island CpG island 1118
Cpgi1119 1 180777503 to 180778656 1153 CpG island CpG island 1119
2900024J01Rik 1 180777970 to 180792160 14190 + lncRNA gene RIKEN cDNA 2900024J01 gene
Cpgi1120 1 180794049 to 180794613 564 CpG island CpG island 1120
D1Mit509 1 180796342 to 180796455 113 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 509
H3f3a 1 180802560 to 180813605 11045 - protein coding gene H3 histone, family 3A
Gm17275 1 180802568 to 180809483 6915 + lincRNA gene predicted gene, 17275
Tssr15545 1 180808241 to 180808246 5 - TSS region transcription start site region 15545
Tssr15546 1 180808673 to 180808676 3 - TSS region transcription start site region 15546
Tssr15547 1 180812328 to 180812332 4 - TSS region transcription start site region 15547
Cpgi1121 1 180812497 to 180814652 2155 CpG island CpG island 1121
Tssr15548 1 180813549 to 180813583 34 - TSS region transcription start site region 15548
Tssr15549 1 180813591 to 180813605 14 - TSS region transcription start site region 15549
G370120E05Rik 1 180813672 to 180833655 19983 + lncRNA gene RIKEN cDNA G370120E05 gene
H3f3aos 1 180813776 to 180816859 3083 + antisense lncRNA gene H3 histone, family 3A, opposite strand
Tssr15550 1 180813865 to 180813882 17 - TSS region transcription start site region 15550