Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:180332387-180583504

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itpkb 1 180330485 to 180424802 94317 + protein coding gene inositol 1,4,5-trisphosphate 3-kinase B
Cpgi1106 1 180330502 to 180332927 2425 CpG island CpG island 1106
Tssr10444 1 180333887 to 180333910 23 + TSS region transcription start site region 10444
Tssr10445 1 180333986 to 180334009 23 + TSS region transcription start site region 10445
Tssr15535 1 180334687 to 180334700 13 - TSS region transcription start site region 15535
Tssr10446 1 180334824 to 180334841 17 + TSS region transcription start site region 10446
Tssr10447 1 180342312 to 180342329 17 + TSS region transcription start site region 10447
Tssr10448 1 180345933 to 180345944 11 + TSS region transcription start site region 10448
Tssr10449 1 180345984 to 180346003 19 + TSS region transcription start site region 10449
Tssr10450 1 180346031 to 180346045 14 + TSS region transcription start site region 10450
Tssr10451 1 180356426 to 180356431 5 + TSS region transcription start site region 10451
Tssr10452 1 180357205 to 180357210 5 + TSS region transcription start site region 10452
Gm37033 1 180357649 to 180364998 7349 + unclassified gene predicted gene, 37033
Tssr10453 1 180363999 to 180364012 13 + TSS region transcription start site region 10453
Tssr10454 1 180364649 to 180364657 8 + TSS region transcription start site region 10454
Cpgi1107 1 180365175 to 180365809 634 CpG island CpG island 1107
Tssr15536 1 180365264 to 180365303 39 - TSS region transcription start site region 15536
Tssr10455 1 180365377 to 180365420 43 + TSS region transcription start site region 10455
Tssr10456 1 180365778 to 180365782 4 + TSS region transcription start site region 10456
Tssr10457 1 180368097 to 180368109 12 + TSS region transcription start site region 10457
Tssr10458 1 180368132 to 180368154 22 + TSS region transcription start site region 10458
Gm37390 1 180372669 to 180373540 871 + unclassified gene predicted gene, 37390
Tssr10459 1 180374938 to 180374941 3 + TSS region transcription start site region 10459
Gm36933 1 180376444 to 180379514 3070 + unclassified gene predicted gene, 36933
Tssr10460 1 180382205 to 180382228 23 + TSS region transcription start site region 10460
Tssr10461 1 180382305 to 180382334 29 + TSS region transcription start site region 10461
Tssr10462 1 180382351 to 180382363 12 + TSS region transcription start site region 10462
Tssr10463 1 180382373 to 180382400 27 + TSS region transcription start site region 10463
Cpgi1108 1 180387467 to 180387805 338 CpG island CpG island 1108
Tssr15537 1 180387476 to 180387490 14 - TSS region transcription start site region 15537
Tssr10464 1 180387742 to 180387772 30 + TSS region transcription start site region 10464
Tssr10465 1 180387999 to 180388004 5 + TSS region transcription start site region 10465
Tssr15538 1 180393032 to 180393072 40 - TSS region transcription start site region 15538
Tssr10466 1 180393344 to 180393348 4 + TSS region transcription start site region 10466
Gm39712 1 180397791 to 180405372 7581 - lncRNA gene predicted gene, 39712
Tssr10467 1 180402041 to 180402063 22 + TSS region transcription start site region 10467
Cpgi1109 1 180403660 to 180404018 358 CpG island CpG island 1109
Tssr15539 1 180403743 to 180403748 5 - TSS region transcription start site region 15539
Tssr10468 1 180419484 to 180419497 13 + TSS region transcription start site region 10468
Tssr10469 1 180421032 to 180421042 10 + TSS region transcription start site region 10469
Tssr10470 1 180421046 to 180421063 17 + TSS region transcription start site region 10470
Cpgi1110 1 180421748 to 180421947 199 CpG island CpG island 1110
Tssr10471 1 180423440 to 180423466 26 + TSS region transcription start site region 10471
Tssr10472 1 180432148 to 180432172 24 + TSS region transcription start site region 10472
Stum 1 180432387 to 180483504 51117 - protein coding gene mechanosensory transduction mediator
Gm37984 1 180473355 to 180477087 3732 - unclassified gene predicted gene, 37984
Cpgi1111 1 180482681 to 180483773 1092 CpG island CpG island 1111
Tssr15540 1 180483410 to 180483485 75 - TSS region transcription start site region 15540
Cpgi1112 1 180483892 to 180484359 467 CpG island CpG island 1112
Gm37267 1 180508778 to 180519727 10949 - lincRNA gene predicted gene, 37267
Gm31986 1 180531425 to 180568795 37370 - lncRNA gene predicted gene, 31986
Tssr10473 1 180541565 to 180541615 50 + TSS region transcription start site region 10473
Cpgi1113 1 180568685 to 180569502 817 CpG island CpG island 1113
Tssr10474 1 180568913 to 180568960 47 + TSS region transcription start site region 10474
Tssr10475 1 180568964 to 180569010 46 + TSS region transcription start site region 10475
Parp1 1 180568975 to 180601254 32279 + protein coding gene poly (ADP-ribose) polymerase family, member 1
Tssr10476 1 180579290 to 180579310 20 + TSS region transcription start site region 10476
Tssr15541 1 180580610 to 180580629 19 - TSS region transcription start site region 15541