Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:180130142-180370345

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdc42bpa 1 179960472 to 180165603 205131 + protein coding gene CDC42 binding protein kinase alpha
Gm38331 1 180145481 to 180148151 2670 - lncRNA gene predicted gene, 38331
Coq8a 1 180165238 to 180196020 30782 - protein coding gene coenzyme Q8A
Tssr15517 1 180193158 to 180193180 22 - TSS region transcription start site region 15517
Tssr15518 1 180193475 to 180193492 17 - TSS region transcription start site region 15518
Tssr15519 1 180193653 to 180193666 13 - TSS region transcription start site region 15519
Cpgi1101 1 180195486 to 180196286 800 CpG island CpG island 1101
Tssr15520 1 180195941 to 180195946 5 - TSS region transcription start site region 15520
Tssr15521 1 180195953 to 180195977 24 - TSS region transcription start site region 15521
Tssr15522 1 180195981 to 180196005 24 - TSS region transcription start site region 15522
Tssr15523 1 180199556 to 180199586 30 - TSS region transcription start site region 15523
Tssr15524 1 180199587 to 180199606 19 - TSS region transcription start site region 15524
Tssr10438 1 180199799 to 180199816 17 + TSS region transcription start site region 10438
Gm37336 1 180202303 to 180212401 10098 - lincRNA gene predicted gene, 37336
Cpgi1102 1 180225995 to 180226269 274 CpG island CpG island 1102
Psen2 1 180227004 to 180263438 36434 - protein coding gene presenilin 2
Tssr15525 1 180229026 to 180229028 2 - TSS region transcription start site region 15525
Tssr15526 1 180229959 to 180230000 41 - TSS region transcription start site region 15526
Tssr15527 1 180230016 to 180230034 18 - TSS region transcription start site region 15527
Tssr15528 1 180230036 to 180230067 31 - TSS region transcription start site region 15528
Tssr15529 1 180235709 to 180235715 6 - TSS region transcription start site region 15529
Tssr15530 1 180245900 to 180245911 11 - TSS region transcription start site region 15530
Tssr15531 1 180245927 to 180245955 28 - TSS region transcription start site region 15531
Cpgi1103 1 180250142 to 180250345 203 CpG island CpG island 1103
Cpgi1104 1 180255801 to 180256599 798 CpG island CpG island 1104
Tssr15532 1 180256238 to 180256258 20 - TSS region transcription start site region 15532
Tssr15533 1 180256294 to 180256305 11 - TSS region transcription start site region 15533
Tssr10439 1 180256390 to 180256435 45 + TSS region transcription start site region 10439
Gm31728 1 180256429 to 180274963 18534 + antisense lncRNA gene predicted gene, 31728
Tssr15534 1 180263465 to 180263497 32 - TSS region transcription start site region 15534
Cpgi1105 1 180289533 to 180289754 221 CpG island CpG island 1105
Tssr10440 1 180294731 to 180294734 3 + TSS region transcription start site region 10440
Gm39713 1 180303202 to 180309067 5865 - lncRNA gene predicted gene, 39713
Tssr320 1 180312863 to 180312879 16 - TSS region transcription start site region 320
Gm5069 1 180326969 to 180330549 3580 - pseudogene predicted pseudogene 5069
Tssr10441 1 180330470 to 180330493 23 + TSS region transcription start site region 10441
Itpkb 1 180330485 to 180424802 94317 + protein coding gene inositol 1,4,5-trisphosphate 3-kinase B
Tssr10442 1 180330495 to 180330536 41 + TSS region transcription start site region 10442
Cpgi1106 1 180330502 to 180332927 2425 CpG island CpG island 1106
Tssr10443 1 180331618 to 180331622 4 + TSS region transcription start site region 10443
Tssr10444 1 180333887 to 180333910 23 + TSS region transcription start site region 10444
Tssr10445 1 180333986 to 180334009 23 + TSS region transcription start site region 10445
Tssr15535 1 180334687 to 180334700 13 - TSS region transcription start site region 15535
Tssr10446 1 180334824 to 180334841 17 + TSS region transcription start site region 10446
Tssr10447 1 180342312 to 180342329 17 + TSS region transcription start site region 10447
Tssr10448 1 180345933 to 180345944 11 + TSS region transcription start site region 10448
Tssr10449 1 180345984 to 180346003 19 + TSS region transcription start site region 10449
Tssr10450 1 180346031 to 180346045 14 + TSS region transcription start site region 10450
Tssr10451 1 180356426 to 180356431 5 + TSS region transcription start site region 10451
Tssr10452 1 180357205 to 180357210 5 + TSS region transcription start site region 10452
Gm37033 1 180357649 to 180364998 7349 + unclassified gene predicted gene, 37033
Tssr10453 1 180363999 to 180364012 13 + TSS region transcription start site region 10453
Tssr10454 1 180364649 to 180364657 8 + TSS region transcription start site region 10454
Cpgi1107 1 180365175 to 180365809 634 CpG island CpG island 1107
Tssr15536 1 180365264 to 180365303 39 - TSS region transcription start site region 15536
Tssr10455 1 180365377 to 180365420 43 + TSS region transcription start site region 10455
Tssr10456 1 180365778 to 180365782 4 + TSS region transcription start site region 10456
Tssr10457 1 180368097 to 180368109 12 + TSS region transcription start site region 10457
Tssr10458 1 180368132 to 180368154 22 + TSS region transcription start site region 10458