Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:180113778-180914727

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdc42bpa 1 179960472 to 180165603 205131 + protein coding gene CDC42 binding protein kinase alpha
9330156P08Rik 1 180125338 to 180129488 4150 unclassified gene RIKEN cDNA 9330156P08 gene
Gm38331 1 180145481 to 180148151 2670 - lncRNA gene predicted gene, 38331
Coq8a 1 180165238 to 180196020 30782 - protein coding gene coenzyme Q8A
Tssr15517 1 180193158 to 180193180 22 - TSS region transcription start site region 15517
Tssr15518 1 180193475 to 180193492 17 - TSS region transcription start site region 15518
Tssr15519 1 180193653 to 180193666 13 - TSS region transcription start site region 15519
Cpgi1101 1 180195486 to 180196286 800 CpG island CpG island 1101
Tssr15520 1 180195941 to 180195946 5 - TSS region transcription start site region 15520
Tssr15521 1 180195953 to 180195977 24 - TSS region transcription start site region 15521
Tssr15522 1 180195981 to 180196005 24 - TSS region transcription start site region 15522
Tssr15523 1 180199556 to 180199586 30 - TSS region transcription start site region 15523
Tssr15524 1 180199587 to 180199606 19 - TSS region transcription start site region 15524
Tssr10438 1 180199799 to 180199816 17 + TSS region transcription start site region 10438
Gm37336 1 180202303 to 180212401 10098 - lincRNA gene predicted gene, 37336
Cpgi1102 1 180225995 to 180226269 274 CpG island CpG island 1102
Psen2 1 180227004 to 180263438 36434 - protein coding gene presenilin 2
Tssr15525 1 180229026 to 180229028 2 - TSS region transcription start site region 15525
Tssr15526 1 180229959 to 180230000 41 - TSS region transcription start site region 15526
Tssr15527 1 180230016 to 180230034 18 - TSS region transcription start site region 15527
Tssr15528 1 180230036 to 180230067 31 - TSS region transcription start site region 15528
Tssr15529 1 180235709 to 180235715 6 - TSS region transcription start site region 15529
Tssr15530 1 180245900 to 180245911 11 - TSS region transcription start site region 15530
Tssr15531 1 180245927 to 180245955 28 - TSS region transcription start site region 15531
Cpgi1103 1 180250142 to 180250345 203 CpG island CpG island 1103
Cpgi1104 1 180255801 to 180256599 798 CpG island CpG island 1104
Tssr15532 1 180256238 to 180256258 20 - TSS region transcription start site region 15532
Tssr15533 1 180256294 to 180256305 11 - TSS region transcription start site region 15533
Tssr10439 1 180256390 to 180256435 45 + TSS region transcription start site region 10439
Gm31728 1 180256429 to 180274963 18534 + antisense lncRNA gene predicted gene, 31728
Tssr15534 1 180263465 to 180263497 32 - TSS region transcription start site region 15534
Cpgi1105 1 180289533 to 180289754 221 CpG island CpG island 1105
Tssr10440 1 180294731 to 180294734 3 + TSS region transcription start site region 10440
Gm39713 1 180303202 to 180309067 5865 - lncRNA gene predicted gene, 39713
Tssr320 1 180312863 to 180312879 16 - TSS region transcription start site region 320
Gm5069 1 180326969 to 180330549 3580 - pseudogene predicted pseudogene 5069
Tssr10441 1 180330470 to 180330493 23 + TSS region transcription start site region 10441
Itpkb 1 180330485 to 180424802 94317 + protein coding gene inositol 1,4,5-trisphosphate 3-kinase B
Tssr10442 1 180330495 to 180330536 41 + TSS region transcription start site region 10442
Cpgi1106 1 180330502 to 180332927 2425 CpG island CpG island 1106
Tssr10443 1 180331618 to 180331622 4 + TSS region transcription start site region 10443
Tssr10444 1 180333887 to 180333910 23 + TSS region transcription start site region 10444
Tssr10445 1 180333986 to 180334009 23 + TSS region transcription start site region 10445
Tssr15535 1 180334687 to 180334700 13 - TSS region transcription start site region 15535
Tssr10446 1 180334824 to 180334841 17 + TSS region transcription start site region 10446
Tssr10447 1 180342312 to 180342329 17 + TSS region transcription start site region 10447
Tssr10448 1 180345933 to 180345944 11 + TSS region transcription start site region 10448
Tssr10449 1 180345984 to 180346003 19 + TSS region transcription start site region 10449
Tssr10450 1 180346031 to 180346045 14 + TSS region transcription start site region 10450
Tssr10451 1 180356426 to 180356431 5 + TSS region transcription start site region 10451
Tssr10452 1 180357205 to 180357210 5 + TSS region transcription start site region 10452
Gm37033 1 180357649 to 180364998 7349 + unclassified gene predicted gene, 37033
Tssr10453 1 180363999 to 180364012 13 + TSS region transcription start site region 10453
Tssr10454 1 180364649 to 180364657 8 + TSS region transcription start site region 10454
Cpgi1107 1 180365175 to 180365809 634 CpG island CpG island 1107
Tssr15536 1 180365264 to 180365303 39 - TSS region transcription start site region 15536
Tssr10455 1 180365377 to 180365420 43 + TSS region transcription start site region 10455
Tssr10456 1 180365778 to 180365782 4 + TSS region transcription start site region 10456
Tssr10457 1 180368097 to 180368109 12 + TSS region transcription start site region 10457
Tssr10458 1 180368132 to 180368154 22 + TSS region transcription start site region 10458
Gm37390 1 180372669 to 180373540 871 + unclassified gene predicted gene, 37390
Tssr10459 1 180374938 to 180374941 3 + TSS region transcription start site region 10459
Gm36933 1 180376444 to 180379514 3070 + unclassified gene predicted gene, 36933
Tssr10460 1 180382205 to 180382228 23 + TSS region transcription start site region 10460
Tssr10461 1 180382305 to 180382334 29 + TSS region transcription start site region 10461
Tssr10462 1 180382351 to 180382363 12 + TSS region transcription start site region 10462
Tssr10463 1 180382373 to 180382400 27 + TSS region transcription start site region 10463
Cpgi1108 1 180387467 to 180387805 338 CpG island CpG island 1108
Tssr15537 1 180387476 to 180387490 14 - TSS region transcription start site region 15537
Tssr10464 1 180387742 to 180387772 30 + TSS region transcription start site region 10464
Tssr10465 1 180387999 to 180388004 5 + TSS region transcription start site region 10465
Tssr15538 1 180393032 to 180393072 40 - TSS region transcription start site region 15538
Tssr10466 1 180393344 to 180393348 4 + TSS region transcription start site region 10466
Gm39712 1 180397791 to 180405372 7581 - lncRNA gene predicted gene, 39712
Tssr10467 1 180402041 to 180402063 22 + TSS region transcription start site region 10467
Cpgi1109 1 180403660 to 180404018 358 CpG island CpG island 1109
Tssr15539 1 180403743 to 180403748 5 - TSS region transcription start site region 15539
Tssr10468 1 180419484 to 180419497 13 + TSS region transcription start site region 10468
Tssr10469 1 180421032 to 180421042 10 + TSS region transcription start site region 10469
Tssr10470 1 180421046 to 180421063 17 + TSS region transcription start site region 10470
Cpgi1110 1 180421748 to 180421947 199 CpG island CpG island 1110
Tssr10471 1 180423440 to 180423466 26 + TSS region transcription start site region 10471
Tssr10472 1 180432148 to 180432172 24 + TSS region transcription start site region 10472
Stum 1 180432387 to 180483504 51117 - protein coding gene mechanosensory transduction mediator
Gm37984 1 180473355 to 180477087 3732 - unclassified gene predicted gene, 37984
Cpgi1111 1 180482681 to 180483773 1092 CpG island CpG island 1111
Tssr15540 1 180483410 to 180483485 75 - TSS region transcription start site region 15540
Cpgi1112 1 180483892 to 180484359 467 CpG island CpG island 1112
Gm37267 1 180508778 to 180519727 10949 - lincRNA gene predicted gene, 37267
Gm31986 1 180531425 to 180568795 37370 - lncRNA gene predicted gene, 31986
Tssr10473 1 180541565 to 180541615 50 + TSS region transcription start site region 10473
Cpgi1113 1 180568685 to 180569502 817 CpG island CpG island 1113
Tssr10474 1 180568913 to 180568960 47 + TSS region transcription start site region 10474
Tssr10475 1 180568964 to 180569010 46 + TSS region transcription start site region 10475
Parp1 1 180568975 to 180601254 32279 + protein coding gene poly (ADP-ribose) polymerase family, member 1
Tssr10476 1 180579290 to 180579310 20 + TSS region transcription start site region 10476
Tssr15541 1 180580610 to 180580629 19 - TSS region transcription start site region 15541
Tssr10477 1 180583808 to 180583823 15 + TSS region transcription start site region 10477
Mir6904 1 180587201 to 180587267 66 + miRNA gene microRNA 6904
Tssr10478 1 180587980 to 180588023 43 + TSS region transcription start site region 10478
Tssr10479 1 180598240 to 180598254 14 + TSS region transcription start site region 10479
Tssr10480 1 180598257 to 180598272 15 + TSS region transcription start site region 10480
Cpgi1114 1 180640546 to 180642100 1554 CpG island CpG island 1114
Tssr10481 1 180640691 to 180640706 15 + TSS region transcription start site region 10481
Lin9 1 180641150 to 180690687 49537 + protein coding gene lin-9 homolog (C. elegans)
Tssr10482 1 180641330 to 180641374 44 + TSS region transcription start site region 10482
Mixl1 1 180693043 to 180697034 3991 - protein coding gene Mix1 homeobox-like 1 (Xenopus laevis)
Tssr15542 1 180694082 to 180694083 1 - TSS region transcription start site region 15542
Cpgi1115 1 180696463 to 180697598 1135 CpG island CpG island 1115
Tssr15543 1 180697022 to 180697028 6 - TSS region transcription start site region 15543
Gm8101 1 180721614 to 180722091 477 + pseudogene predicted gene 8101
Cpgi1116 1 180725499 to 180726661 1162 CpG island CpG island 1116
Tssr10483 1 180726005 to 180726017 12 + TSS region transcription start site region 10483
Tssr10484 1 180726019 to 180726106 87 + TSS region transcription start site region 10484
Acbd3 1 180726043 to 180754204 28161 + protein coding gene acyl-Coenzyme A binding domain containing 3
Tssr10485 1 180726324 to 180726351 27 + TSS region transcription start site region 10485
Tssr10486 1 180727273 to 180727286 13 + TSS region transcription start site region 10486
Tssr10487 1 180731838 to 180731844 6 + TSS region transcription start site region 10487
Tssr10488 1 180733166 to 180733190 24 + TSS region transcription start site region 10488
Tssr15544 1 180734430 to 180734441 11 - TSS region transcription start site region 15544
Gm37768 1 180743210 to 180755836 12626 - antisense lncRNA gene predicted gene, 37768
Tssr10489 1 180748915 to 180748923 8 + TSS region transcription start site region 10489
Tssr10490 1 180749811 to 180749823 12 + TSS region transcription start site region 10490
Tssr10491 1 180749907 to 180749931 24 + TSS region transcription start site region 10491
5830405M20Rik 1 180755837 to 180758887 3050 unclassified non-coding RNA gene RIKEN cDNA 5830405M20 gene
Gm38293 1 180763497 to 180768656 5159 - lincRNA gene predicted gene, 38293
Cpgi1117 1 180763663 to 180763876 213 CpG island CpG island 1117
Cpgi1118 1 180768227 to 180768776 549 CpG island CpG island 1118
Cpgi1119 1 180777503 to 180778656 1153 CpG island CpG island 1119
2900024J01Rik 1 180777970 to 180792160 14190 + lncRNA gene RIKEN cDNA 2900024J01 gene
Cpgi1120 1 180794049 to 180794613 564 CpG island CpG island 1120
D1Mit509 1 180796342 to 180796455 113 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 509
H3f3a 1 180802560 to 180813605 11045 - protein coding gene H3 histone, family 3A
Gm17275 1 180802568 to 180809483 6915 + lincRNA gene predicted gene, 17275
Tssr15545 1 180808241 to 180808246 5 - TSS region transcription start site region 15545
Tssr15546 1 180808673 to 180808676 3 - TSS region transcription start site region 15546
Tssr15547 1 180812328 to 180812332 4 - TSS region transcription start site region 15547
Cpgi1121 1 180812497 to 180814652 2155 CpG island CpG island 1121
Tssr15548 1 180813549 to 180813583 34 - TSS region transcription start site region 15548
Tssr15549 1 180813591 to 180813605 14 - TSS region transcription start site region 15549
G370120E05Rik 1 180813672 to 180833655 19983 + lncRNA gene RIKEN cDNA G370120E05 gene
H3f3aos 1 180813776 to 180816859 3083 + antisense lncRNA gene H3 histone, family 3A, opposite strand
Tssr15550 1 180813865 to 180813882 17 - TSS region transcription start site region 15550
Tssr15551 1 180829882 to 180829892 10 - TSS region transcription start site region 15551
Cpgi1122 1 180830329 to 180830490 161 CpG island CpG island 1122
Gm24836 1 180832769 to 180832876 107 + snRNA gene predicted gene, 24836
Tssr10492 1 180848305 to 180848337 32 + TSS region transcription start site region 10492
Tssr15552 1 180848649 to 180848658 9 - TSS region transcription start site region 15552
Tssr321 1 180848677 to 180848688 11 - TSS region transcription start site region 321
Tssr322 1 180848695 to 180848711 16 - TSS region transcription start site region 322
Tssr15553 1 180848924 to 180848939 15 - TSS region transcription start site region 15553
Tssr10493 1 180849132 to 180849144 12 + TSS region transcription start site region 10493
Tssr10494 1 180849159 to 180849170 11 + TSS region transcription start site region 10494
Tssr323 1 180849182 to 180849192 10 + TSS region transcription start site region 323
Tssr10495 1 180849220 to 180849228 8 + TSS region transcription start site region 10495
Cpgi1123 1 180850425 to 180851467 1042 CpG island CpG island 1123
Tssr15554 1 180850860 to 180850864 4 - TSS region transcription start site region 15554
Tssr10496 1 180851087 to 180851110 23 + TSS region transcription start site region 10496
Tssr10497 1 180851113 to 180851130 17 + TSS region transcription start site region 10497
Tssr10498 1 180851131 to 180851172 41 + TSS region transcription start site region 10498
Sde2 1 180851151 to 180868113 16962 + protein coding gene SDE2 telomere maintenance homolog (S. pombe)
Gm20305 1 180854282 to 180854458 176 - pseudogene predicted gene, 20305
Gm18036 1 180874878 to 180875326 448 + pseudogene predicted gene, 18036
Gm39714 1 180875512 to 180885858 10346 - lncRNA gene predicted gene, 39714
Tssr15555 1 180885490 to 180885520 30 - TSS region transcription start site region 15555
Tssr15556 1 180885551 to 180885601 50 - TSS region transcription start site region 15556
Tssr10499 1 180893107 to 180893108 1 + TSS region transcription start site region 10499
Lefty2 1 180893108 to 180899103 5995 + protein coding gene left-right determination factor 2
Cpgi1124 1 180894314 to 180894968 654 CpG island CpG island 1124
Tssr15557 1 180894413 to 180894436 23 - TSS region transcription start site region 15557
Cpgi1125 1 180903853 to 180904880 1027 CpG island CpG island 1125
Tssr10500 1 180904278 to 180904343 65 + TSS region transcription start site region 10500
Pycr2 1 180904293 to 180908088 3795 + protein coding gene pyrroline-5-carboxylate reductase family, member 2
Tssr10501 1 180904740 to 180904783 43 + TSS region transcription start site region 10501
Tssr15558 1 180906893 to 180906900 7 - TSS region transcription start site region 15558
Gm32199 1 180912117 to 180914468 2351 + lncRNA gene predicted gene, 32199