Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:179860472-180265603

42 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm31668	1	179866087 to 179878414	12327	-	lncRNA gene	predicted gene, 31668
Tssr10432	1	179866671 to 179866674	3	+	TSS region	transcription start site region 10432
Gm37070	1	179924952 to 179925411	459	-	pseudogene	predicted gene, 37070
Cpgi1100	1	179959126 to 179960730	1604		CpG island	CpG island 1100
Tssr10433	1	179959972 to 179959981	9	+	TSS region	transcription start site region 10433
Tssr10434	1	179959984 to 179960080	96	+	TSS region	transcription start site region 10434
Cdc42bpa	1	179960472 to 180165603	205131	+	protein coding gene	CDC42 binding protein kinase alpha
Tssr10435	1	179960774 to 179960779	5	+	TSS region	transcription start site region 10435
Tssr10436	1	179975935 to 179975939	4	+	TSS region	transcription start site region 10436
Gm38169	1	180021062 to 180023600	2538	+	unclassified gene	predicted gene, 38169
Tssr15516	1	180027449 to 180027451	2	-	TSS region	transcription start site region 15516
Tssr10437	1	180072458 to 180072482	24	+	TSS region	transcription start site region 10437
9330156P08Rik	1	180125338 to 180129488	4150		unclassified gene	RIKEN cDNA 9330156P08 gene
Gm38331	1	180145481 to 180148151	2670	-	lncRNA gene	predicted gene, 38331
Coq8a	1	180165238 to 180196020	30782	-	protein coding gene	coenzyme Q8A
Tssr15517	1	180193158 to 180193180	22	-	TSS region	transcription start site region 15517
Tssr15518	1	180193475 to 180193492	17	-	TSS region	transcription start site region 15518
Tssr15519	1	180193653 to 180193666	13	-	TSS region	transcription start site region 15519
Cpgi1101	1	180195486 to 180196286	800		CpG island	CpG island 1101
Tssr15520	1	180195941 to 180195946	5	-	TSS region	transcription start site region 15520
Tssr15521	1	180195953 to 180195977	24	-	TSS region	transcription start site region 15521
Tssr15522	1	180195981 to 180196005	24	-	TSS region	transcription start site region 15522
Tssr15523	1	180199556 to 180199586	30	-	TSS region	transcription start site region 15523
Tssr15524	1	180199587 to 180199606	19	-	TSS region	transcription start site region 15524
Tssr10438	1	180199799 to 180199816	17	+	TSS region	transcription start site region 10438
Gm37336	1	180202303 to 180212401	10098	-	lincRNA gene	predicted gene, 37336
Cpgi1102	1	180225995 to 180226269	274		CpG island	CpG island 1102
Psen2	1	180227004 to 180263438	36434	-	protein coding gene	presenilin 2
Tssr15525	1	180229026 to 180229028	2	-	TSS region	transcription start site region 15525
Tssr15526	1	180229959 to 180230000	41	-	TSS region	transcription start site region 15526
Tssr15527	1	180230016 to 180230034	18	-	TSS region	transcription start site region 15527
Tssr15528	1	180230036 to 180230067	31	-	TSS region	transcription start site region 15528
Tssr15529	1	180235709 to 180235715	6	-	TSS region	transcription start site region 15529
Tssr15530	1	180245900 to 180245911	11	-	TSS region	transcription start site region 15530
Tssr15531	1	180245927 to 180245955	28	-	TSS region	transcription start site region 15531
Cpgi1103	1	180250142 to 180250345	203		CpG island	CpG island 1103
Cpgi1104	1	180255801 to 180256599	798		CpG island	CpG island 1104
Tssr15532	1	180256238 to 180256258	20	-	TSS region	transcription start site region 15532
Tssr15533	1	180256294 to 180256305	11	-	TSS region	transcription start site region 15533
Tssr10439	1	180256390 to 180256435	45	+	TSS region	transcription start site region 10439
Gm31728	1	180256429 to 180274963	18534	+	antisense lncRNA gene	predicted gene, 31728
Tssr15534	1	180263465 to 180263497	32	-	TSS region	transcription start site region 15534