Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:179068882-179738886

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smyd3 1 178955031 to 179518053 563022 - protein coding gene SET and MYND domain containing 3
Tssr15496 1 179139419 to 179139423 4 - TSS region transcription start site region 15496
Tssr15497 1 179156264 to 179156307 43 - TSS region transcription start site region 15497
Tssr10416 1 179174449 to 179174478 29 + TSS region transcription start site region 10416
A130004G11Rik 1 179237130 to 179240753 3623 unclassified gene RIKEN cDNA A130004G11 gene
Gm46250 1 179307543 to 179320650 13107 - lncRNA gene predicted gene, 46250
Gm31349 1 179324935 to 179328064 3129 - lncRNA gene predicted gene, 31349
Tssr15498 1 179381703 to 179381717 14 - TSS region transcription start site region 15498
D1Ertd704e 1 179400846 to 179401089 243 DNA segment DNA segment, Chr 1, ERATO Doi 704, expressed
Tssr15499 1 179403882 to 179403886 4 - TSS region transcription start site region 15499
Tssr15500 1 179502114 to 179502118 4 - TSS region transcription start site region 15500
Cpgi1095 1 179517215 to 179518143 928 CpG island CpG island 1095
Tssr15501 1 179517976 to 179517989 13 - TSS region transcription start site region 15501
Tssr15502 1 179517992 to 179518026 34 - TSS region transcription start site region 15502
Tssr15503 1 179518028 to 179518045 17 - TSS region transcription start site region 15503
Gm5561 1 179520378 to 179520857 479 - pseudogene predicted gene 5561
Tfb2m 1 179528055 to 179546267 18212 - protein coding gene transcription factor B2, mitochondrial
Gm15480 1 179538417 to 179538935 518 + pseudogene predicted gene 15480
Cpgi1096 1 179545680 to 179547007 1327 CpG island CpG island 1096
Tssr15504 1 179546227 to 179546260 33 - TSS region transcription start site region 15504
Tssr15505 1 179546261 to 179546276 15 - TSS region transcription start site region 15505
Tssr10417 1 179546303 to 179546363 60 + TSS region transcription start site region 10417
Cnst 1 179546370 to 179627478 81108 + protein coding gene consortin, connexin sorting protein
Tssr10418 1 179546383 to 179546405 22 + TSS region transcription start site region 10418
Tssr10419 1 179546408 to 179546433 25 + TSS region transcription start site region 10419
Tssr10420 1 179546434 to 179546520 86 + TSS region transcription start site region 10420
Tssr10421 1 179546521 to 179546538 17 + TSS region transcription start site region 10421
Tssr10422 1 179549655 to 179549677 22 + TSS region transcription start site region 10422
Cpgi1097 1 179591749 to 179591924 175 CpG island CpG island 1097
Cpgi1098 1 179667575 to 179668737 1162 CpG island CpG island 1098
Tssr10423 1 179668024 to 179668034 10 + TSS region transcription start site region 10423
Tssr10424 1 179668187 to 179668198 11 + TSS region transcription start site region 10424
Tssr10425 1 179668202 to 179668268 66 + TSS region transcription start site region 10425
Sccpdh 1 179668210 to 179687189 18979 + protein coding gene saccharopine dehydrogenase (putative)
Tssr10426 1 179668276 to 179668287 11 + TSS region transcription start site region 10426
Tssr10427 1 179668298 to 179668354 56 + TSS region transcription start site region 10427
Tssr10428 1 179668413 to 179668420 7 + TSS region transcription start site region 10428
Tssr10429 1 179677249 to 179677290 41 + TSS region transcription start site region 10429
Kif28 1 179695297 to 179745213 49916 - protein coding gene kinesin family member 28