Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:178588417-180488935

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcq11 1 169310000 to 179820000 10510000 QTL total cholesterol QTL 11
Kif26b 1 178529125 to 178939200 410075 + protein coding gene kinesin family member 26B
4930527L19Rik 1 178588650 to 178588883 233 unclassified gene RIKEN cDNA 4930527L19 gene
Tssr15494 1 178590358 to 178590373 15 - TSS region transcription start site region 15494
Gm39710 1 178608246 to 178617000 8754 - lncRNA gene predicted gene, 39710
Tssr10409 1 178636896 to 178636904 8 + TSS region transcription start site region 10409
Gm24405 1 178636905 to 178637071 166 + snRNA gene predicted gene, 24405
D1Mit405 1 178662154 to 178662273 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 405
Tssr10410 1 178739990 to 178739991 1 + TSS region transcription start site region 10410
Gm34176 1 178755808 to 178756281 473 + pseudogene predicted gene, 34176
Tssr10411 1 178766993 to 178766999 6 + TSS region transcription start site region 10411
Gm46249 1 178775960 to 178784669 8709 + lncRNA gene predicted gene, 46249
Tssr10412 1 178798396 to 178798427 31 + TSS region transcription start site region 10412
Tssr10413 1 178798448 to 178798467 19 + TSS region transcription start site region 10413
Tssr10414 1 178821040 to 178821041 1 + TSS region transcription start site region 10414
Tssr10415 1 178828106 to 178828110 4 + TSS region transcription start site region 10415
Tssr319 1 178871442 to 178871443 1 + TSS region transcription start site region 319
Gm16564 1 178898582 to 178917614 19032 - antisense lncRNA gene predicted gene 16564
Cpgi1094 1 178917298 to 178918101 803 CpG island CpG island 1094
A730054J21Rik 1 178935043 to 178939199 4156 unclassified gene RIKEN cDNA A730054J21 gene
D1Mit315 1 178940049 to 178940193 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 315
Smyd3 1 178955031 to 179518053 563022 - protein coding gene SET and MYND domain containing 3
Tssr15495 1 178989350 to 178989360 10 - TSS region transcription start site region 15495
Tssr15496 1 179139419 to 179139423 4 - TSS region transcription start site region 15496
Tssr15497 1 179156264 to 179156307 43 - TSS region transcription start site region 15497
Tssr10416 1 179174449 to 179174478 29 + TSS region transcription start site region 10416
A130004G11Rik 1 179237130 to 179240753 3623 unclassified gene RIKEN cDNA A130004G11 gene
Gm46250 1 179307543 to 179320650 13107 - lncRNA gene predicted gene, 46250
Gm31349 1 179324935 to 179328064 3129 - lncRNA gene predicted gene, 31349
Tssr15498 1 179381703 to 179381717 14 - TSS region transcription start site region 15498
D1Ertd704e 1 179400846 to 179401089 243 DNA segment DNA segment, Chr 1, ERATO Doi 704, expressed
Tssr15499 1 179403882 to 179403886 4 - TSS region transcription start site region 15499
Tssr15500 1 179502114 to 179502118 4 - TSS region transcription start site region 15500
Cpgi1095 1 179517215 to 179518143 928 CpG island CpG island 1095
Tssr15501 1 179517976 to 179517989 13 - TSS region transcription start site region 15501
Tssr15502 1 179517992 to 179518026 34 - TSS region transcription start site region 15502
Tssr15503 1 179518028 to 179518045 17 - TSS region transcription start site region 15503
Gm5561 1 179520378 to 179520857 479 - pseudogene predicted gene 5561
Tfb2m 1 179528055 to 179546267 18212 - protein coding gene transcription factor B2, mitochondrial
Gm15480 1 179538417 to 179538935 518 + pseudogene predicted gene 15480
Cpgi1096 1 179545680 to 179547007 1327 CpG island CpG island 1096
Tssr15504 1 179546227 to 179546260 33 - TSS region transcription start site region 15504
Tssr15505 1 179546261 to 179546276 15 - TSS region transcription start site region 15505
Tssr10417 1 179546303 to 179546363 60 + TSS region transcription start site region 10417
Cnst 1 179546370 to 179627478 81108 + protein coding gene consortin, connexin sorting protein
Tssr10418 1 179546383 to 179546405 22 + TSS region transcription start site region 10418
Tssr10419 1 179546408 to 179546433 25 + TSS region transcription start site region 10419
Tssr10420 1 179546434 to 179546520 86 + TSS region transcription start site region 10420
Tssr10421 1 179546521 to 179546538 17 + TSS region transcription start site region 10421
Tssr10422 1 179549655 to 179549677 22 + TSS region transcription start site region 10422
Cpgi1097 1 179591749 to 179591924 175 CpG island CpG island 1097
Cpgi1098 1 179667575 to 179668737 1162 CpG island CpG island 1098
Tssr10423 1 179668024 to 179668034 10 + TSS region transcription start site region 10423
Tssr10424 1 179668187 to 179668198 11 + TSS region transcription start site region 10424
Tssr10425 1 179668202 to 179668268 66 + TSS region transcription start site region 10425
Sccpdh 1 179668210 to 179687189 18979 + protein coding gene saccharopine dehydrogenase (putative)
Tssr10426 1 179668276 to 179668287 11 + TSS region transcription start site region 10426
Tssr10427 1 179668298 to 179668354 56 + TSS region transcription start site region 10427
Tssr10428 1 179668413 to 179668420 7 + TSS region transcription start site region 10428
Tssr10429 1 179677249 to 179677290 41 + TSS region transcription start site region 10429
Kif28 1 179695297 to 179745213 49916 - protein coding gene kinesin family member 28
Ahctf1 1 179744894 to 179803680 58786 - protein coding gene AT hook containing transcription factor 1
Tssr15506 1 179802499 to 179802521 22 - TSS region transcription start site region 15506
Cpgi1099 1 179802830 to 179804091 1261 CpG island CpG island 1099
Tssr15507 1 179803072 to 179803109 37 - TSS region transcription start site region 15507
Tssr15508 1 179803164 to 179803170 6 - TSS region transcription start site region 15508
Tssr15509 1 179803193 to 179803214 21 - TSS region transcription start site region 15509
Tssr15510 1 179803216 to 179803222 6 - TSS region transcription start site region 15510
Gm10518 1 179803376 to 179804676 1300 + protein coding gene predicted gene 10518
Tssr10430 1 179803474 to 179803477 3 + TSS region transcription start site region 10430
Tssr15511 1 179803606 to 179803624 18 - TSS region transcription start site region 15511
Tssr15512 1 179803625 to 179803702 77 - TSS region transcription start site region 15512
Tssr15513 1 179803703 to 179803714 11 - TSS region transcription start site region 15513
Tssr15514 1 179803828 to 179803846 18 - TSS region transcription start site region 15514
Tssr15515 1 179803854 to 179803892 38 - TSS region transcription start site region 15515
Tssr10431 1 179846054 to 179846062 8 + TSS region transcription start site region 10431
Gm31668 1 179866087 to 179878414 12327 - lncRNA gene predicted gene, 31668
Tssr10432 1 179866671 to 179866674 3 + TSS region transcription start site region 10432
Gm37070 1 179924952 to 179925411 459 - pseudogene predicted gene, 37070
Cpgi1100 1 179959126 to 179960730 1604 CpG island CpG island 1100
Tssr10433 1 179959972 to 179959981 9 + TSS region transcription start site region 10433
Tssr10434 1 179959984 to 179960080 96 + TSS region transcription start site region 10434
Cdc42bpa 1 179960472 to 180165603 205131 + protein coding gene CDC42 binding protein kinase alpha
Tssr10435 1 179960774 to 179960779 5 + TSS region transcription start site region 10435
Tssr10436 1 179975935 to 179975939 4 + TSS region transcription start site region 10436
Gm38169 1 180021062 to 180023600 2538 + unclassified gene predicted gene, 38169
Tssr15516 1 180027449 to 180027451 2 - TSS region transcription start site region 15516
Tssr10437 1 180072458 to 180072482 24 + TSS region transcription start site region 10437
9330156P08Rik 1 180125338 to 180129488 4150 unclassified gene RIKEN cDNA 9330156P08 gene
Gm38331 1 180145481 to 180148151 2670 - lncRNA gene predicted gene, 38331
Coq8a 1 180165238 to 180196020 30782 - protein coding gene coenzyme Q8A
Tssr15517 1 180193158 to 180193180 22 - TSS region transcription start site region 15517
Tssr15518 1 180193475 to 180193492 17 - TSS region transcription start site region 15518
Tssr15519 1 180193653 to 180193666 13 - TSS region transcription start site region 15519
Cpgi1101 1 180195486 to 180196286 800 CpG island CpG island 1101
Tssr15520 1 180195941 to 180195946 5 - TSS region transcription start site region 15520
Tssr15521 1 180195953 to 180195977 24 - TSS region transcription start site region 15521
Tssr15522 1 180195981 to 180196005 24 - TSS region transcription start site region 15522
Tssr15523 1 180199556 to 180199586 30 - TSS region transcription start site region 15523
Tssr15524 1 180199587 to 180199606 19 - TSS region transcription start site region 15524
Tssr10438 1 180199799 to 180199816 17 + TSS region transcription start site region 10438
Gm37336 1 180202303 to 180212401 10098 - lincRNA gene predicted gene, 37336
Cpgi1102 1 180225995 to 180226269 274 CpG island CpG island 1102
Psen2 1 180227004 to 180263438 36434 - protein coding gene presenilin 2
Tssr15525 1 180229026 to 180229028 2 - TSS region transcription start site region 15525
Tssr15526 1 180229959 to 180230000 41 - TSS region transcription start site region 15526
Tssr15527 1 180230016 to 180230034 18 - TSS region transcription start site region 15527
Tssr15528 1 180230036 to 180230067 31 - TSS region transcription start site region 15528
Tssr15529 1 180235709 to 180235715 6 - TSS region transcription start site region 15529
Tssr15530 1 180245900 to 180245911 11 - TSS region transcription start site region 15530
Tssr15531 1 180245927 to 180245955 28 - TSS region transcription start site region 15531
Cpgi1103 1 180250142 to 180250345 203 CpG island CpG island 1103
Cpgi1104 1 180255801 to 180256599 798 CpG island CpG island 1104
Tssr15532 1 180256238 to 180256258 20 - TSS region transcription start site region 15532
Tssr15533 1 180256294 to 180256305 11 - TSS region transcription start site region 15533
Tssr10439 1 180256390 to 180256435 45 + TSS region transcription start site region 10439
Gm31728 1 180256429 to 180274963 18534 + antisense lncRNA gene predicted gene, 31728
Tssr15534 1 180263465 to 180263497 32 - TSS region transcription start site region 15534
Cpgi1105 1 180289533 to 180289754 221 CpG island CpG island 1105
Tssr10440 1 180294731 to 180294734 3 + TSS region transcription start site region 10440
Gm39713 1 180303202 to 180309067 5865 - lncRNA gene predicted gene, 39713
Tssr320 1 180312863 to 180312879 16 - TSS region transcription start site region 320
Gm5069 1 180326969 to 180330549 3580 - pseudogene predicted pseudogene 5069
Tssr10441 1 180330470 to 180330493 23 + TSS region transcription start site region 10441
Itpkb 1 180330485 to 180424802 94317 + protein coding gene inositol 1,4,5-trisphosphate 3-kinase B
Tssr10442 1 180330495 to 180330536 41 + TSS region transcription start site region 10442
Cpgi1106 1 180330502 to 180332927 2425 CpG island CpG island 1106
Tssr10443 1 180331618 to 180331622 4 + TSS region transcription start site region 10443
Tssr10444 1 180333887 to 180333910 23 + TSS region transcription start site region 10444
Tssr10445 1 180333986 to 180334009 23 + TSS region transcription start site region 10445
Tssr15535 1 180334687 to 180334700 13 - TSS region transcription start site region 15535
Tssr10446 1 180334824 to 180334841 17 + TSS region transcription start site region 10446
Tssr10447 1 180342312 to 180342329 17 + TSS region transcription start site region 10447
Tssr10448 1 180345933 to 180345944 11 + TSS region transcription start site region 10448
Tssr10449 1 180345984 to 180346003 19 + TSS region transcription start site region 10449
Tssr10450 1 180346031 to 180346045 14 + TSS region transcription start site region 10450
Tssr10451 1 180356426 to 180356431 5 + TSS region transcription start site region 10451
Tssr10452 1 180357205 to 180357210 5 + TSS region transcription start site region 10452
Gm37033 1 180357649 to 180364998 7349 + unclassified gene predicted gene, 37033
Tssr10453 1 180363999 to 180364012 13 + TSS region transcription start site region 10453
Tssr10454 1 180364649 to 180364657 8 + TSS region transcription start site region 10454
Cpgi1107 1 180365175 to 180365809 634 CpG island CpG island 1107
Tssr15536 1 180365264 to 180365303 39 - TSS region transcription start site region 15536
Tssr10455 1 180365377 to 180365420 43 + TSS region transcription start site region 10455
Tssr10456 1 180365778 to 180365782 4 + TSS region transcription start site region 10456
Tssr10457 1 180368097 to 180368109 12 + TSS region transcription start site region 10457
Tssr10458 1 180368132 to 180368154 22 + TSS region transcription start site region 10458
Gm37390 1 180372669 to 180373540 871 + unclassified gene predicted gene, 37390
Tssr10459 1 180374938 to 180374941 3 + TSS region transcription start site region 10459
Gm36933 1 180376444 to 180379514 3070 + unclassified gene predicted gene, 36933
Tssr10460 1 180382205 to 180382228 23 + TSS region transcription start site region 10460
Tssr10461 1 180382305 to 180382334 29 + TSS region transcription start site region 10461
Tssr10462 1 180382351 to 180382363 12 + TSS region transcription start site region 10462
Tssr10463 1 180382373 to 180382400 27 + TSS region transcription start site region 10463
Cpgi1108 1 180387467 to 180387805 338 CpG island CpG island 1108
Tssr15537 1 180387476 to 180387490 14 - TSS region transcription start site region 15537
Tssr10464 1 180387742 to 180387772 30 + TSS region transcription start site region 10464
Tssr10465 1 180387999 to 180388004 5 + TSS region transcription start site region 10465
Tssr15538 1 180393032 to 180393072 40 - TSS region transcription start site region 15538
Tssr10466 1 180393344 to 180393348 4 + TSS region transcription start site region 10466
Gm39712 1 180397791 to 180405372 7581 - lncRNA gene predicted gene, 39712
Tssr10467 1 180402041 to 180402063 22 + TSS region transcription start site region 10467
Cpgi1109 1 180403660 to 180404018 358 CpG island CpG island 1109
Tssr15539 1 180403743 to 180403748 5 - TSS region transcription start site region 15539
Tssr10468 1 180419484 to 180419497 13 + TSS region transcription start site region 10468
Tssr10469 1 180421032 to 180421042 10 + TSS region transcription start site region 10469
Tssr10470 1 180421046 to 180421063 17 + TSS region transcription start site region 10470
Cpgi1110 1 180421748 to 180421947 199 CpG island CpG island 1110
Tssr10471 1 180423440 to 180423466 26 + TSS region transcription start site region 10471
Tssr10472 1 180432148 to 180432172 24 + TSS region transcription start site region 10472
Stum 1 180432387 to 180483504 51117 - protein coding gene mechanosensory transduction mediator
Gm37984 1 180473355 to 180477087 3732 - unclassified gene predicted gene, 37984
Cpgi1111 1 180482681 to 180483773 1092 CpG island CpG island 1111
Tssr15540 1 180483410 to 180483485 75 - TSS region transcription start site region 15540
Cpgi1112 1 180483892 to 180484359 467 CpG island CpG island 1112