Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:178511960-179958041

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcq11 1 169310000 to 179820000 10510000 QTL total cholesterol QTL 11
Gm31289 1 178504096 to 178513939 9843 + lncRNA gene predicted gene, 31289
Gm39709 1 178514232 to 178518038 3806 + lncRNA gene predicted gene, 39709
Tssr10401 1 178525719 to 178525735 16 + TSS region transcription start site region 10401
Cpgi1093 1 178527283 to 178531028 3745 CpG island CpG island 1093
Tssr10402 1 178528593 to 178528631 38 + TSS region transcription start site region 10402
Tssr10403 1 178528853 to 178528867 14 + TSS region transcription start site region 10403
Tssr10404 1 178529113 to 178529134 21 + TSS region transcription start site region 10404
Kif26b 1 178529125 to 178939200 410075 + protein coding gene kinesin family member 26B
Tssr10405 1 178555697 to 178555716 19 + TSS region transcription start site region 10405
Tssr10406 1 178555870 to 178555881 11 + TSS region transcription start site region 10406
Tssr10407 1 178555886 to 178555899 13 + TSS region transcription start site region 10407
Tssr10408 1 178566477 to 178566481 4 + TSS region transcription start site region 10408
4930527L19Rik 1 178588650 to 178588883 233 unclassified gene RIKEN cDNA 4930527L19 gene
Tssr15494 1 178590358 to 178590373 15 - TSS region transcription start site region 15494
Gm39710 1 178608246 to 178617000 8754 - lncRNA gene predicted gene, 39710
Tssr10409 1 178636896 to 178636904 8 + TSS region transcription start site region 10409
Gm24405 1 178636905 to 178637071 166 + snRNA gene predicted gene, 24405
D1Mit405 1 178662154 to 178662273 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 405
Tssr10410 1 178739990 to 178739991 1 + TSS region transcription start site region 10410
Gm34176 1 178755808 to 178756281 473 + pseudogene predicted gene, 34176
Tssr10411 1 178766993 to 178766999 6 + TSS region transcription start site region 10411
Gm46249 1 178775960 to 178784669 8709 + lncRNA gene predicted gene, 46249
Tssr10412 1 178798396 to 178798427 31 + TSS region transcription start site region 10412
Tssr10413 1 178798448 to 178798467 19 + TSS region transcription start site region 10413
Tssr10414 1 178821040 to 178821041 1 + TSS region transcription start site region 10414
Tssr10415 1 178828106 to 178828110 4 + TSS region transcription start site region 10415
Tssr319 1 178871442 to 178871443 1 + TSS region transcription start site region 319
Gm16564 1 178898582 to 178917614 19032 - antisense lncRNA gene predicted gene 16564
Cpgi1094 1 178917298 to 178918101 803 CpG island CpG island 1094
A730054J21Rik 1 178935043 to 178939199 4156 unclassified gene RIKEN cDNA A730054J21 gene
D1Mit315 1 178940049 to 178940193 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 315
Smyd3 1 178955031 to 179518053 563022 - protein coding gene SET and MYND domain containing 3
Tssr15495 1 178989350 to 178989360 10 - TSS region transcription start site region 15495
Tssr15496 1 179139419 to 179139423 4 - TSS region transcription start site region 15496
Tssr15497 1 179156264 to 179156307 43 - TSS region transcription start site region 15497
Tssr10416 1 179174449 to 179174478 29 + TSS region transcription start site region 10416
A130004G11Rik 1 179237130 to 179240753 3623 unclassified gene RIKEN cDNA A130004G11 gene
Gm46250 1 179307543 to 179320650 13107 - lncRNA gene predicted gene, 46250
Gm31349 1 179324935 to 179328064 3129 - lncRNA gene predicted gene, 31349
Tssr15498 1 179381703 to 179381717 14 - TSS region transcription start site region 15498
D1Ertd704e 1 179400846 to 179401089 243 DNA segment DNA segment, Chr 1, ERATO Doi 704, expressed
Tssr15499 1 179403882 to 179403886 4 - TSS region transcription start site region 15499
Tssr15500 1 179502114 to 179502118 4 - TSS region transcription start site region 15500
Cpgi1095 1 179517215 to 179518143 928 CpG island CpG island 1095
Tssr15501 1 179517976 to 179517989 13 - TSS region transcription start site region 15501
Tssr15502 1 179517992 to 179518026 34 - TSS region transcription start site region 15502
Tssr15503 1 179518028 to 179518045 17 - TSS region transcription start site region 15503
Gm5561 1 179520378 to 179520857 479 - pseudogene predicted gene 5561
Tfb2m 1 179528055 to 179546267 18212 - protein coding gene transcription factor B2, mitochondrial
Gm15480 1 179538417 to 179538935 518 + pseudogene predicted gene 15480
Cpgi1096 1 179545680 to 179547007 1327 CpG island CpG island 1096
Tssr15504 1 179546227 to 179546260 33 - TSS region transcription start site region 15504
Tssr15505 1 179546261 to 179546276 15 - TSS region transcription start site region 15505
Tssr10417 1 179546303 to 179546363 60 + TSS region transcription start site region 10417
Cnst 1 179546370 to 179627478 81108 + protein coding gene consortin, connexin sorting protein
Tssr10418 1 179546383 to 179546405 22 + TSS region transcription start site region 10418
Tssr10419 1 179546408 to 179546433 25 + TSS region transcription start site region 10419
Tssr10420 1 179546434 to 179546520 86 + TSS region transcription start site region 10420
Tssr10421 1 179546521 to 179546538 17 + TSS region transcription start site region 10421
Tssr10422 1 179549655 to 179549677 22 + TSS region transcription start site region 10422
Cpgi1097 1 179591749 to 179591924 175 CpG island CpG island 1097
Cpgi1098 1 179667575 to 179668737 1162 CpG island CpG island 1098
Tssr10423 1 179668024 to 179668034 10 + TSS region transcription start site region 10423
Tssr10424 1 179668187 to 179668198 11 + TSS region transcription start site region 10424
Tssr10425 1 179668202 to 179668268 66 + TSS region transcription start site region 10425
Sccpdh 1 179668210 to 179687189 18979 + protein coding gene saccharopine dehydrogenase (putative)
Tssr10426 1 179668276 to 179668287 11 + TSS region transcription start site region 10426
Tssr10427 1 179668298 to 179668354 56 + TSS region transcription start site region 10427
Tssr10428 1 179668413 to 179668420 7 + TSS region transcription start site region 10428
Tssr10429 1 179677249 to 179677290 41 + TSS region transcription start site region 10429
Kif28 1 179695297 to 179745213 49916 - protein coding gene kinesin family member 28
Ahctf1 1 179744894 to 179803680 58786 - protein coding gene AT hook containing transcription factor 1
Tssr15506 1 179802499 to 179802521 22 - TSS region transcription start site region 15506
Cpgi1099 1 179802830 to 179804091 1261 CpG island CpG island 1099
Tssr15507 1 179803072 to 179803109 37 - TSS region transcription start site region 15507
Tssr15508 1 179803164 to 179803170 6 - TSS region transcription start site region 15508
Tssr15509 1 179803193 to 179803214 21 - TSS region transcription start site region 15509
Tssr15510 1 179803216 to 179803222 6 - TSS region transcription start site region 15510
Gm10518 1 179803376 to 179804676 1300 + protein coding gene predicted gene 10518
Tssr10430 1 179803474 to 179803477 3 + TSS region transcription start site region 10430
Tssr15511 1 179803606 to 179803624 18 - TSS region transcription start site region 15511
Tssr15512 1 179803625 to 179803702 77 - TSS region transcription start site region 15512
Tssr15513 1 179803703 to 179803714 11 - TSS region transcription start site region 15513
Tssr15514 1 179803828 to 179803846 18 - TSS region transcription start site region 15514
Tssr15515 1 179803854 to 179803892 38 - TSS region transcription start site region 15515
Tssr10431 1 179846054 to 179846062 8 + TSS region transcription start site region 10431
Gm31668 1 179866087 to 179878414 12327 - lncRNA gene predicted gene, 31668
Tssr10432 1 179866671 to 179866674 3 + TSS region transcription start site region 10432
Gm37070 1 179924952 to 179925411 459 - pseudogene predicted gene, 37070