Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:178400808-179111281

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi1092 1 178405627 to 178406670 1043 CpG island CpG island 1092
Efcab2 1 178405881 to 178483250 77369 + protein coding gene EF-hand calcium binding domain 2
Tssr10392 1 178406017 to 178406020 3 + TSS region transcription start site region 10392
Tssr10393 1 178406031 to 178406034 3 + TSS region transcription start site region 10393
Tssr10394 1 178406038 to 178406045 7 + TSS region transcription start site region 10394
Tssr10395 1 178406052 to 178406070 18 + TSS region transcription start site region 10395
Tssr10396 1 178406072 to 178406105 33 + TSS region transcription start site region 10396
Tssr15493 1 178406415 to 178406439 24 - TSS region transcription start site region 15493
Tssr10397 1 178406495 to 178406560 65 + TSS region transcription start site region 10397
Tssr10398 1 178448606 to 178448615 9 + TSS region transcription start site region 10398
Tssr10399 1 178448626 to 178448648 22 + TSS region transcription start site region 10399
Tssr10400 1 178448658 to 178448701 43 + TSS region transcription start site region 10400
Gm31289 1 178504096 to 178513939 9843 + lncRNA gene predicted gene, 31289
Gm39709 1 178514232 to 178518038 3806 + lncRNA gene predicted gene, 39709
Tssr10401 1 178525719 to 178525735 16 + TSS region transcription start site region 10401
Cpgi1093 1 178527283 to 178531028 3745 CpG island CpG island 1093
Tssr10402 1 178528593 to 178528631 38 + TSS region transcription start site region 10402
Tssr10403 1 178528853 to 178528867 14 + TSS region transcription start site region 10403
Tssr10404 1 178529113 to 178529134 21 + TSS region transcription start site region 10404
Kif26b 1 178529125 to 178939200 410075 + protein coding gene kinesin family member 26B
Tssr10405 1 178555697 to 178555716 19 + TSS region transcription start site region 10405
Tssr10406 1 178555870 to 178555881 11 + TSS region transcription start site region 10406
Tssr10407 1 178555886 to 178555899 13 + TSS region transcription start site region 10407
Tssr10408 1 178566477 to 178566481 4 + TSS region transcription start site region 10408
4930527L19Rik 1 178588650 to 178588883 233 unclassified gene RIKEN cDNA 4930527L19 gene
Tssr15494 1 178590358 to 178590373 15 - TSS region transcription start site region 15494
Gm39710 1 178608246 to 178617000 8754 - lncRNA gene predicted gene, 39710
Tssr10409 1 178636896 to 178636904 8 + TSS region transcription start site region 10409
Gm24405 1 178636905 to 178637071 166 + snRNA gene predicted gene, 24405
D1Mit405 1 178662154 to 178662273 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 405
Tssr10410 1 178739990 to 178739991 1 + TSS region transcription start site region 10410
Gm34176 1 178755808 to 178756281 473 + pseudogene predicted gene, 34176
Tssr10411 1 178766993 to 178766999 6 + TSS region transcription start site region 10411
Gm46249 1 178775960 to 178784669 8709 + lncRNA gene predicted gene, 46249
Tssr10412 1 178798396 to 178798427 31 + TSS region transcription start site region 10412
Tssr10413 1 178798448 to 178798467 19 + TSS region transcription start site region 10413
Tssr10414 1 178821040 to 178821041 1 + TSS region transcription start site region 10414
Tssr10415 1 178828106 to 178828110 4 + TSS region transcription start site region 10415
Tssr319 1 178871442 to 178871443 1 + TSS region transcription start site region 319
Gm16564 1 178898582 to 178917614 19032 - antisense lncRNA gene predicted gene 16564
Cpgi1094 1 178917298 to 178918101 803 CpG island CpG island 1094
A730054J21Rik 1 178935043 to 178939199 4156 unclassified gene RIKEN cDNA A730054J21 gene
D1Mit315 1 178940049 to 178940193 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 315
Smyd3 1 178955031 to 179518053 563022 - protein coding gene SET and MYND domain containing 3
Tssr15495 1 178989350 to 178989360 10 - TSS region transcription start site region 15495