Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:177952283-179106028

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Catspere1 1 177808550 to 177962233 153683 + protein coding gene cation channel sperm associated auxiliary subunit epsilon 1
Cpgi1085 1 177983088 to 177983750 662 CpG island CpG island 1085
Catspere2 1 177983423 to 178172704 189281 + protein coding gene catsper channel auxiliary subunit epsilon 2
Tssr10371 1 177983427 to 177983463 36 + TSS region transcription start site region 10371
Tssr10372 1 177983466 to 177983477 11 + TSS region transcription start site region 10372
Gm37313 1 177989662 to 177998739 9077 - pseudogene predicted gene, 37313
Gm25312 1 178028033 to 178028139 106 - snRNA gene predicted gene, 25312
Cpgi1086 1 178143191 to 178143357 166 CpG island CpG island 1086
Gm8010 1 178143301 to 178144272 971 + pseudogene predicted gene 8010
Gm10519 1 178186328 to 178187883 1555 unclassified gene predicted gene 10519
Cpgi1087 1 178187308 to 178188010 702 CpG island CpG island 1087
Desi2 1 178187417 to 178252598 65181 + protein coding gene desumoylating isopeptidase 2
Tssr10373 1 178187679 to 178187713 34 + TSS region transcription start site region 10373
Tssr10374 1 178187721 to 178187725 4 + TSS region transcription start site region 10374
Tssr10375 1 178211141 to 178211190 49 + TSS region transcription start site region 10375
Tssr10376 1 178236504 to 178236508 4 + TSS region transcription start site region 10376
Gm8023 1 178266204 to 178267106 902 + pseudogene predicted gene 8023
Cpgi1088 1 178275722 to 178276977 1255 CpG island CpG island 1088
4930527J03Rik 1 178276047 to 178276641 594 - unclassified non-coding RNA gene RIKEN cDNA 4930527J03 gene
Tssr15462 1 178276636 to 178276651 15 - TSS region transcription start site region 15462
D1Mit371.1b 1 178283043 to 178283154 111 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 371.1b
D1Mit371 1 178283143 to 178283287 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 371
Gm46174 1 178283380 to 178299913 16533 - lncRNA gene predicted gene, 46174
Gm37486 1 178299396 to 178299800 404 + pseudogene predicted gene, 37486
Tssr10377 1 178299499 to 178299514 15 + TSS region transcription start site region 10377
B230369F24Rik 1 178314003 to 178315735 1732 - antisense lncRNA gene RIKEN cDNA B230369F24 gene
Tssr15463 1 178315472 to 178315482 10 - TSS region transcription start site region 15463
Cpgi1089 1 178318116 to 178319327 1211 CpG island CpG island 1089
Tssr15464 1 178318170 to 178318192 22 - TSS region transcription start site region 15464
Tssr15465 1 178318199 to 178318211 12 - TSS region transcription start site region 15465
Tssr10378 1 178318810 to 178318865 55 + TSS region transcription start site region 10378
Tssr10379 1 178319127 to 178319138 11 + TSS region transcription start site region 10379
Cox20 1 178319130 to 178322693 3563 + protein coding gene cytochrome c oxidase assembly protein 20
Tssr10380 1 178319142 to 178319171 29 + TSS region transcription start site region 10380
Tssr10381 1 178319269 to 178319289 20 + TSS region transcription start site region 10381
Tssr10382 1 178319328 to 178319339 11 + TSS region transcription start site region 10382
Hnrnpu 1 178321108 to 178337797 16689 - protein coding gene heterogeneous nuclear ribonucleoprotein U
Tssr15466 1 178329056 to 178329068 12 - TSS region transcription start site region 15466
Tssr15467 1 178329178 to 178329193 15 - TSS region transcription start site region 15467
Tssr15468 1 178331122 to 178331137 15 - TSS region transcription start site region 15468
Tssr15469 1 178331196 to 178331207 11 - TSS region transcription start site region 15469
Tssr15470 1 178331456 to 178331478 22 - TSS region transcription start site region 15470
Tssr10383 1 178331912 to 178331929 17 + TSS region transcription start site region 10383
Tssr15471 1 178331937 to 178331962 25 - TSS region transcription start site region 15471
Tssr15472 1 178332121 to 178332140 19 - TSS region transcription start site region 15472
Tssr15473 1 178332187 to 178332204 17 - TSS region transcription start site region 15473
Tssr15474 1 178332234 to 178332296 62 - TSS region transcription start site region 15474
Tssr15475 1 178332304 to 178332317 13 - TSS region transcription start site region 15475
Tssr15476 1 178333026 to 178333040 14 - TSS region transcription start site region 15476
Tssr15477 1 178333571 to 178333605 34 - TSS region transcription start site region 15477
Tssr15478 1 178333640 to 178333651 11 - TSS region transcription start site region 15478
Tssr15479 1 178333927 to 178333966 39 - TSS region transcription start site region 15479
Tssr15480 1 178334555 to 178334565 10 - TSS region transcription start site region 15480
Tssr10384 1 178335906 to 178335923 17 + TSS region transcription start site region 10384
Tssr15481 1 178336068 to 178336093 25 - TSS region transcription start site region 15481
Tssr10385 1 178336103 to 178336137 34 + TSS region transcription start site region 10385
Tssr15482 1 178336145 to 178336164 19 - TSS region transcription start site region 15482
Tssr10386 1 178336209 to 178336214 5 + TSS region transcription start site region 10386
Cpgi1090 1 178336329 to 178338084 1755 CpG island CpG island 1090
Tssr15483 1 178336397 to 178336408 11 - TSS region transcription start site region 15483
Tssr316 1 178337069 to 178337087 18 - TSS region transcription start site region 316
Tssr10387 1 178337082 to 178337178 96 + TSS region transcription start site region 10387
Tssr15484 1 178337100 to 178337118 18 - TSS region transcription start site region 15484
Tssr15485 1 178337159 to 178337172 13 - TSS region transcription start site region 15485
Tssr15486 1 178337240 to 178337253 13 - TSS region transcription start site region 15486
Tssr15487 1 178337291 to 178337319 28 - TSS region transcription start site region 15487
Tssr10388 1 178337292 to 178337316 24 + TSS region transcription start site region 10388
Tssr317 1 178337587 to 178337591 4 - TSS region transcription start site region 317
Tssr15488 1 178337648 to 178337652 4 - TSS region transcription start site region 15488
Tssr15489 1 178337673 to 178337694 21 - TSS region transcription start site region 15489
Tssr15490 1 178337706 to 178337733 27 - TSS region transcription start site region 15490
Tssr15491 1 178337740 to 178337761 21 - TSS region transcription start site region 15491
Tssr15492 1 178337774 to 178337794 20 - TSS region transcription start site region 15492
Tssr318 1 178337804 to 178337816 12 - TSS region transcription start site region 318
Tssr10389 1 178337870 to 178337902 32 + TSS region transcription start site region 10389
Tssr10390 1 178337971 to 178337987 16 + TSS region transcription start site region 10390
Tssr10391 1 178338194 to 178338198 4 + TSS region transcription start site region 10391
Gm38300 1 178339601 to 178341470 1869 + unclassified gene predicted gene, 38300
D1Mit62 1 178348598 to 178348734 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 62
Gm27458 1 178363401 to 178363521 120 - miRNA gene predicted gene, 27458
Cpgi1091 1 178368589 to 178369279 690 CpG island CpG island 1091
Bw8q1 1 178373696 to 178373830 134 QTL body weight at 8 weeks QTL 1
D1Mit116 1 178373696 to 178373830 134 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 116
Gm24919 1 178390819 to 178390924 105 + snRNA gene predicted gene, 24919
Cpgi1092 1 178405627 to 178406670 1043 CpG island CpG island 1092
Efcab2 1 178405881 to 178483250 77369 + protein coding gene EF-hand calcium binding domain 2
Tssr10392 1 178406017 to 178406020 3 + TSS region transcription start site region 10392
Tssr10393 1 178406031 to 178406034 3 + TSS region transcription start site region 10393
Tssr10394 1 178406038 to 178406045 7 + TSS region transcription start site region 10394
Tssr10395 1 178406052 to 178406070 18 + TSS region transcription start site region 10395
Tssr10396 1 178406072 to 178406105 33 + TSS region transcription start site region 10396
Tssr15493 1 178406415 to 178406439 24 - TSS region transcription start site region 15493
Tssr10397 1 178406495 to 178406560 65 + TSS region transcription start site region 10397
Tssr10398 1 178448606 to 178448615 9 + TSS region transcription start site region 10398
Tssr10399 1 178448626 to 178448648 22 + TSS region transcription start site region 10399
Tssr10400 1 178448658 to 178448701 43 + TSS region transcription start site region 10400
Gm31289 1 178504096 to 178513939 9843 + lncRNA gene predicted gene, 31289
Gm39709 1 178514232 to 178518038 3806 + lncRNA gene predicted gene, 39709
Tssr10401 1 178525719 to 178525735 16 + TSS region transcription start site region 10401
Cpgi1093 1 178527283 to 178531028 3745 CpG island CpG island 1093
Tssr10402 1 178528593 to 178528631 38 + TSS region transcription start site region 10402
Tssr10403 1 178528853 to 178528867 14 + TSS region transcription start site region 10403
Tssr10404 1 178529113 to 178529134 21 + TSS region transcription start site region 10404
Kif26b 1 178529125 to 178939200 410075 + protein coding gene kinesin family member 26B
Tssr10405 1 178555697 to 178555716 19 + TSS region transcription start site region 10405
Tssr10406 1 178555870 to 178555881 11 + TSS region transcription start site region 10406
Tssr10407 1 178555886 to 178555899 13 + TSS region transcription start site region 10407
Tssr10408 1 178566477 to 178566481 4 + TSS region transcription start site region 10408
4930527L19Rik 1 178588650 to 178588883 233 unclassified gene RIKEN cDNA 4930527L19 gene
Tssr15494 1 178590358 to 178590373 15 - TSS region transcription start site region 15494
Gm39710 1 178608246 to 178617000 8754 - lncRNA gene predicted gene, 39710
Tssr10409 1 178636896 to 178636904 8 + TSS region transcription start site region 10409
Gm24405 1 178636905 to 178637071 166 + snRNA gene predicted gene, 24405
D1Mit405 1 178662154 to 178662273 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 405
Tssr10410 1 178739990 to 178739991 1 + TSS region transcription start site region 10410
Gm34176 1 178755808 to 178756281 473 + pseudogene predicted gene, 34176
Tssr10411 1 178766993 to 178766999 6 + TSS region transcription start site region 10411
Gm46249 1 178775960 to 178784669 8709 + lncRNA gene predicted gene, 46249
Tssr10412 1 178798396 to 178798427 31 + TSS region transcription start site region 10412
Tssr10413 1 178798448 to 178798467 19 + TSS region transcription start site region 10413
Tssr10414 1 178821040 to 178821041 1 + TSS region transcription start site region 10414
Tssr10415 1 178828106 to 178828110 4 + TSS region transcription start site region 10415
Tssr319 1 178871442 to 178871443 1 + TSS region transcription start site region 319
Gm16564 1 178898582 to 178917614 19032 - antisense lncRNA gene predicted gene 16564
Cpgi1094 1 178917298 to 178918101 803 CpG island CpG island 1094
A730054J21Rik 1 178935043 to 178939199 4156 unclassified gene RIKEN cDNA A730054J21 gene
D1Mit315 1 178940049 to 178940193 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 315
Smyd3 1 178955031 to 179518053 563022 - protein coding gene SET and MYND domain containing 3
Tssr15495 1 178989350 to 178989360 10 - TSS region transcription start site region 15495