Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:177648033-178408139

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D1Mit115 1 177680074 to 177680220 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 115
D1Mit165 1 177706183 to 177706329 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 165
Gm30115 1 177706710 to 177729769 23059 - lncRNA gene predicted gene, 30115
Tssr10363 1 177711245 to 177711251 6 + TSS region transcription start site region 10363
1700016C15Rik 1 177729814 to 177753324 23510 + protein coding gene RIKEN cDNA 1700016C15 gene
Tssr314 1 177729838 to 177729839 1 + TSS region transcription start site region 314
Tssr10364 1 177729843 to 177729869 26 + TSS region transcription start site region 10364
Tssr10365 1 177729880 to 177729893 13 + TSS region transcription start site region 10365
Tssr10366 1 177740831 to 177740855 24 + TSS region transcription start site region 10366
Tssr10367 1 177740859 to 177740897 38 + TSS region transcription start site region 10367
Tssr10368 1 177740919 to 177740996 77 + TSS region transcription start site region 10368
Tssr10369 1 177741019 to 177741034 15 + TSS region transcription start site region 10369
Tssr15447 1 177744638 to 177744643 5 - TSS region transcription start site region 15447
Adss 1 177763176 to 177796695 33519 - protein coding gene adenylosuccinate synthetase, non muscle
Tssr15448 1 177763412 to 177763440 28 - TSS region transcription start site region 15448
Tssr15449 1 177763691 to 177763702 11 - TSS region transcription start site region 15449
Tssr15450 1 177773408 to 177773413 5 - TSS region transcription start site region 15450
Tssr15451 1 177776592 to 177776607 15 - TSS region transcription start site region 15451
Gm16585 1 177786856 to 177787465 609 + pseudogene predicted gene 16585
Tssr15452 1 177795504 to 177795510 6 - TSS region transcription start site region 15452
Cpgi1084 1 177795778 to 177796921 1143 CpG island CpG island 1084
Tssr15453 1 177796414 to 177796433 19 - TSS region transcription start site region 15453
Tssr15454 1 177796451 to 177796514 63 - TSS region transcription start site region 15454
Tssr15455 1 177796535 to 177796546 11 - TSS region transcription start site region 15455
Tssr15456 1 177796610 to 177796619 9 - TSS region transcription start site region 15456
Tssr15457 1 177796637 to 177796648 11 - TSS region transcription start site region 15457
Tssr15458 1 177796663 to 177796673 10 - TSS region transcription start site region 15458
Tssr15459 1 177796674 to 177796677 3 - TSS region transcription start site region 15459
Tssr315 1 177796687 to 177796690 3 - TSS region transcription start site region 315
Tssr15460 1 177796693 to 177796700 7 - TSS region transcription start site region 15460
Tssr15461 1 177796716 to 177796725 9 - TSS region transcription start site region 15461
Catspere1 1 177808550 to 177962233 153683 + protein coding gene cation channel sperm associated auxiliary subunit epsilon 1
Tssr10370 1 177840371 to 177840391 20 + TSS region transcription start site region 10370
Cpgi1085 1 177983088 to 177983750 662 CpG island CpG island 1085
Catspere2 1 177983423 to 178172704 189281 + protein coding gene catsper channel auxiliary subunit epsilon 2
Tssr10371 1 177983427 to 177983463 36 + TSS region transcription start site region 10371
Tssr10372 1 177983466 to 177983477 11 + TSS region transcription start site region 10372
Gm37313 1 177989662 to 177998739 9077 - pseudogene predicted gene, 37313
Gm25312 1 178028033 to 178028139 106 - snRNA gene predicted gene, 25312
Cpgi1086 1 178143191 to 178143357 166 CpG island CpG island 1086
Gm8010 1 178143301 to 178144272 971 + pseudogene predicted gene 8010
Gm10519 1 178186328 to 178187883 1555 unclassified gene predicted gene 10519
Cpgi1087 1 178187308 to 178188010 702 CpG island CpG island 1087
Desi2 1 178187417 to 178252598 65181 + protein coding gene desumoylating isopeptidase 2
Tssr10373 1 178187679 to 178187713 34 + TSS region transcription start site region 10373
Tssr10374 1 178187721 to 178187725 4 + TSS region transcription start site region 10374
Tssr10375 1 178211141 to 178211190 49 + TSS region transcription start site region 10375
Tssr10376 1 178236504 to 178236508 4 + TSS region transcription start site region 10376
Gm8023 1 178266204 to 178267106 902 + pseudogene predicted gene 8023
Cpgi1088 1 178275722 to 178276977 1255 CpG island CpG island 1088
4930527J03Rik 1 178276047 to 178276641 594 - unclassified non-coding RNA gene RIKEN cDNA 4930527J03 gene
Tssr15462 1 178276636 to 178276651 15 - TSS region transcription start site region 15462
D1Mit371.1b 1 178283043 to 178283154 111 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 371.1b
D1Mit371 1 178283143 to 178283287 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 371
Gm46174 1 178283380 to 178299913 16533 - lncRNA gene predicted gene, 46174
Gm37486 1 178299396 to 178299800 404 + pseudogene predicted gene, 37486
Tssr10377 1 178299499 to 178299514 15 + TSS region transcription start site region 10377
B230369F24Rik 1 178314003 to 178315735 1732 - antisense lncRNA gene RIKEN cDNA B230369F24 gene
Tssr15463 1 178315472 to 178315482 10 - TSS region transcription start site region 15463
Cpgi1089 1 178318116 to 178319327 1211 CpG island CpG island 1089
Tssr15464 1 178318170 to 178318192 22 - TSS region transcription start site region 15464
Tssr15465 1 178318199 to 178318211 12 - TSS region transcription start site region 15465
Tssr10378 1 178318810 to 178318865 55 + TSS region transcription start site region 10378
Tssr10379 1 178319127 to 178319138 11 + TSS region transcription start site region 10379
Cox20 1 178319130 to 178322693 3563 + protein coding gene cytochrome c oxidase assembly protein 20
Tssr10380 1 178319142 to 178319171 29 + TSS region transcription start site region 10380
Tssr10381 1 178319269 to 178319289 20 + TSS region transcription start site region 10381
Tssr10382 1 178319328 to 178319339 11 + TSS region transcription start site region 10382
Hnrnpu 1 178321108 to 178337797 16689 - protein coding gene heterogeneous nuclear ribonucleoprotein U
Tssr15466 1 178329056 to 178329068 12 - TSS region transcription start site region 15466
Tssr15467 1 178329178 to 178329193 15 - TSS region transcription start site region 15467
Tssr15468 1 178331122 to 178331137 15 - TSS region transcription start site region 15468
Tssr15469 1 178331196 to 178331207 11 - TSS region transcription start site region 15469
Tssr15470 1 178331456 to 178331478 22 - TSS region transcription start site region 15470
Tssr10383 1 178331912 to 178331929 17 + TSS region transcription start site region 10383
Tssr15471 1 178331937 to 178331962 25 - TSS region transcription start site region 15471
Tssr15472 1 178332121 to 178332140 19 - TSS region transcription start site region 15472
Tssr15473 1 178332187 to 178332204 17 - TSS region transcription start site region 15473
Tssr15474 1 178332234 to 178332296 62 - TSS region transcription start site region 15474
Tssr15475 1 178332304 to 178332317 13 - TSS region transcription start site region 15475
Tssr15476 1 178333026 to 178333040 14 - TSS region transcription start site region 15476
Tssr15477 1 178333571 to 178333605 34 - TSS region transcription start site region 15477
Tssr15478 1 178333640 to 178333651 11 - TSS region transcription start site region 15478
Tssr15479 1 178333927 to 178333966 39 - TSS region transcription start site region 15479
Tssr15480 1 178334555 to 178334565 10 - TSS region transcription start site region 15480
Tssr10384 1 178335906 to 178335923 17 + TSS region transcription start site region 10384
Tssr15481 1 178336068 to 178336093 25 - TSS region transcription start site region 15481
Tssr10385 1 178336103 to 178336137 34 + TSS region transcription start site region 10385
Tssr15482 1 178336145 to 178336164 19 - TSS region transcription start site region 15482
Tssr10386 1 178336209 to 178336214 5 + TSS region transcription start site region 10386
Cpgi1090 1 178336329 to 178338084 1755 CpG island CpG island 1090
Tssr15483 1 178336397 to 178336408 11 - TSS region transcription start site region 15483
Tssr316 1 178337069 to 178337087 18 - TSS region transcription start site region 316
Tssr10387 1 178337082 to 178337178 96 + TSS region transcription start site region 10387
Tssr15484 1 178337100 to 178337118 18 - TSS region transcription start site region 15484
Tssr15485 1 178337159 to 178337172 13 - TSS region transcription start site region 15485
Tssr15486 1 178337240 to 178337253 13 - TSS region transcription start site region 15486
Tssr15487 1 178337291 to 178337319 28 - TSS region transcription start site region 15487
Tssr10388 1 178337292 to 178337316 24 + TSS region transcription start site region 10388
Tssr317 1 178337587 to 178337591 4 - TSS region transcription start site region 317
Tssr15488 1 178337648 to 178337652 4 - TSS region transcription start site region 15488
Tssr15489 1 178337673 to 178337694 21 - TSS region transcription start site region 15489
Tssr15490 1 178337706 to 178337733 27 - TSS region transcription start site region 15490
Tssr15491 1 178337740 to 178337761 21 - TSS region transcription start site region 15491
Tssr15492 1 178337774 to 178337794 20 - TSS region transcription start site region 15492
Tssr318 1 178337804 to 178337816 12 - TSS region transcription start site region 318
Tssr10389 1 178337870 to 178337902 32 + TSS region transcription start site region 10389
Tssr10390 1 178337971 to 178337987 16 + TSS region transcription start site region 10390
Tssr10391 1 178338194 to 178338198 4 + TSS region transcription start site region 10391
Gm38300 1 178339601 to 178341470 1869 + unclassified gene predicted gene, 38300
D1Mit62 1 178348598 to 178348734 136 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 62
Gm27458 1 178363401 to 178363521 120 - miRNA gene predicted gene, 27458
Cpgi1091 1 178368589 to 178369279 690 CpG island CpG island 1091
D1Mit116 1 178373696 to 178373830 134 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 116
Bw8q1 1 178373696 to 178373830 134 QTL body weight at 8 weeks QTL 1
Gm24919 1 178390819 to 178390924 105 + snRNA gene predicted gene, 24919
Cpgi1092 1 178405627 to 178406670 1043 CpG island CpG island 1092
Efcab2 1 178405881 to 178483250 77369 + protein coding gene EF-hand calcium binding domain 2
Tssr10392 1 178406017 to 178406020 3 + TSS region transcription start site region 10392
Tssr10393 1 178406031 to 178406034 3 + TSS region transcription start site region 10393
Tssr10394 1 178406038 to 178406045 7 + TSS region transcription start site region 10394
Tssr10395 1 178406052 to 178406070 18 + TSS region transcription start site region 10395
Tssr10396 1 178406072 to 178406105 33 + TSS region transcription start site region 10396
Tssr15493 1 178406415 to 178406439 24 - TSS region transcription start site region 15493
Tssr10397 1 178406495 to 178406560 65 + TSS region transcription start site region 10397